BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888512

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | high mobility...   560    3e-159


> AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | high mobility 
group B5 | chr4:16887165-16888356 REVERSE LENGTH=654
Length=654

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 355/380 (93%), Gaps = 4/380 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAGATAACCAAACGGAAGTTGAATCGAGGAGCACTGATGATAGATTGAAAGTTAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   ATGAAAGATAACCAAACGGAAGTTGAATCGAGGAGCACTGATGATAGATTGAAAGTTAGA  138

Query  61   GGTAATAAAGGTGGAAAGAAAACAAAGGATCCAAACAAGCCTAAGAAACCTCCAAGTCCT  120
            || || |||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct  139  GGGAACAAAGTTGGAAAGAAAACAAAGGATCCAAACAGGCCTAAGAAACCACCAAGTCCT  198

Query  121  TTCTTCGTCTTCCTGGACGATTTCCGAAGGGAGTTTAATCTAGCTAACCCTGACAACAAA  180
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  199  TTCTTCGTCTTCCTGGACGATTTCCGAAAGGAGTTTAATCTGGCTAACCCTGACAACAAA  258

Query  181  TCCGTCGCTAGTGTTGGTAAAGCTGCCGGAAAGAAATGGAAATCGATGACTGAAGAAGAT  240
            ||||||| || |||||||| ||| || ||||||||||||||| | |||||||||||||| 
Sbjct  259  TCCGTCGGTAATGTTGGTAGAGCAGCTGGAAAGAAATGGAAAACCATGACTGAAGAAGA-  317

Query  241  AA-AGCACCTTTTGTAGCAAAAGCAAAGAGCAAAAAGACTGAGTATGCTGCGACTATGCA  299
            || ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct  318  AAGAGCACCTTTTGTAGCAAAATCACAGAGCAAAAAGACTGAGTATGCTGTGACTATGCA  377

Query  300  ACAGTATAACATGGAACTGGCTAATGGAACCAAGACAACTGGAGATGATGAGAAACAAGA  359
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  378  ACAGTATAACATGGAACTGGCTAATGGAAACAAGACAACTGGAGATGATGAGAAACAAGA  437

Query  360  GGA-GAAAGCTGATGATTAG  378
            | | |   ||||||||||||
Sbjct  438  GAAAGCT-GCTGATGATTAG  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5