BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888523
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35470.1 | Symbols: PIRL4 | plant intracellular ras group-re... 2628 0.0
AT2G17440.1 | Symbols: PIRL5 | plant intracellular ras group-re... 767 0.0
> AT4G35470.1 | Symbols: PIRL4 | plant intracellular ras group-related
LRR 4 | chr4:16846301-16849150 FORWARD LENGTH=2478
Length=2478
Score = 2628 bits (1423), Expect = 0.0
Identities = 1586/1662 (95%), Gaps = 21/1662 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTGATACAAATGGATAAGCGTTTGGATTCAACAGAGCAAGTGGTTGAAGAAATC 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 231 ATGGATTTGATGCAAATGGATAAGCGTTTGGATTCAACGGAGCAAGTGGTTGAAGAAATC 290
Query 61 ATGAGAATTCACAGATCTCTACCAC-CAAGACCAGGAATTGACGAAGTTGAAGCTGCCAA 119
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 291 ATGAGAATTCACAGATCTCTACC-CGCAAGACCAGGAATTGACGAAGTTGAAGCTGCCAA 349
Query 120 GGGTTTGATTGACAACGTTGAGAAAGAAGATCAAGCTTGTTTAGAAGCCATTGCTAAACA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 GGGTTTGATTGACAACGTTGAGAAAGAAGATCAAGCTTGTTTAGAAGCCATTGCTAGACA 409
Query 180 GAGGAAAAGCTCTGAAGTTCCTGGTGAGCTTCTCATGGTGTTGCAAGAAATGAAGAAAGG 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 410 GAGGAAAAGCTCTGAAGTTCCTGGTGAGCTTTTCATGGTGTTGCAAGAAATGAAGAAGGG 469
Query 240 TTATGTTCAGTTTCGTACCAAAGAACAGA-AACGAGAAGCTTCAAAGCTTCTCGATCTGG 298
||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 470 TTATGTTCAGTTTCGTAGCAAAGAACAGATAA-GAGAAGCTTTGAAGCTTCTCGATCTGG 528
Query 299 AAAGTATTCACGCTTTGTTCGATGATTTCATTCAAAGAGCTTCTAATCGCATTGCTTCTC 358
|| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 AATCTGTTCACTCTTTGTTCGATGATTTCATTCAAAGAGCTTCTAATTGCATTGCTTCTC 588
Query 359 CTTCCTCTAACGGCTCTGTTTCGTCTCGTCCTCCGCTGCCTCCGGCGACTACAACGACGG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 589 CTTCCTCTAACGGCTCTGTTTCGTCTCGTCCTCCGCTGCCTCCGGCGACTAC---GACGG 645
Query 419 CTGTTCGTTCTGATTCTCAGTCAAGTTTGAATTTTTCTGAGA-AGGCTCCTGTTCGTCCC 477
||| |||||||||||||||||||||||||||||||||||||| || |||| ||||| |||
Sbjct 646 CTGCTCGTTCTGATTCTCAGTCAAGTTTGAATTTTTCTGAGAGAG-CTCCCGTTCGCCCC 704
Query 478 AAGGATATGGTTTCACGAGACGATAGCTTCGTCGTCACAAAGTCTAAGCCTTCT-CTCT- 535
|||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 705 AAGGATATGGTTTCGCGAGACGATAGCTTCGTC---ACAAAGTCTAAGCCTTCTTCTCTC 761
Query 536 -ACAGTGATGGTTTTGCAGCTCCACGAA-AACCACCACAGATTCTCGATTCAACACTTAC 593
|||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 762 TACAGTGATGGTTTTGCAGCTCCTCCTCGAAG-ACCACAGATTCTCGATTCAACACTTAC 820
Query 594 CGCCGGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATC 653
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CACCGGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATC 880
Query 654 AGCTAAGAAAGCTACTCCAGAGATAAATCTACAGAACAAGTTAACGGATCAAGTCGAGTG 713
||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 881 AGCTAAGAAAGCTACACAAGAGATAAATCTACAGAACAAGTTAACGGAACAACTCGAGTG 940
Query 714 GCTTCCGGATTCTCTTGGCAAGTTATCGAGCTTAACTTCGCTTGATTTGTCTGAGAATCA 773
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 941 GCTTCCAGATTCTCTTGGCAAGTTATCGAGTTTAACTTCGCTTGATTTGTCTGAGAATCA 1000
Query 774 CATTGTGGTGTTGCCAAACACTATAGGAGGACTTTCTTCCTTGACAAAGCTCGATTTGCA 833
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1001 CATTGTGGTGTTGCCAAACACTATAGGAGGACTTTCTTCCTTGACAAAACTCGATTTGCA 1060
Query 834 TTCTAACAGAATCGGTCAGCTTCCTGAGTCTATTGGAGAATTGTTGAACTTGGTTTACCT 893
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1061 TTCCAACAGAATCGGTCAGCTTCCTGAGTCTATAGGAGAATTGTTGAACTTGGTTTACCT 1120
Query 894 TAATCTTGGTAGCAACCAGTTATCGT-TGCTGCCTTCAGCGTTTAGCAGATTGGTGCGAC 952
||||||||||||||||||||||| | | ||||||||||||||||| |||||||| ||||
Sbjct 1121 CAATCTTGGTAGCAACCAGTTATCATCT-CTGCCTTCAGCGTTTAGTAGATTGGTTCGAC 1179
Query 953 TCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCGATCGGTTCTC 1012
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1180 TCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCCATAGGTTCGC 1239
Query 1013 TTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATTCTA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATTCTA 1299
Query 1073 TTGGTGGATGTTCTTCTCTGAAAGAACTCCGTGCAGATTATAACAAACTCAAGGCTCTTC 1132
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1300 TTGGTGGATGTTCTTCTCTGATAGAACTCCGTGCAGATTATAACAAACTAAAGGCTCTTC 1359
Query 1133 CTGAAGCTATTGGGAAGATTACTACATTAGAGATCTTGTCTGTCCGTTACAATAACATCA 1192
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1360 CAGAAGCTATTGGGAAGATTACTACATTAGAGATCTTGTCTGTGCGTTACAATAACATCA 1419
Query 1193 GGCAGTTACCTACGACGATGTCTTCTTTAGCTAACCTCAAAGAGCTGGATGTCAGTTTCA 1252
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1420 GGCAGTTACCTACGACGATGTCTTCTTTAGCTAGCCTCAAAGAGCTGGATGTGAGTTTCA 1479
Query 1253 ACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACGCTTGTGAAGCTGAATA 1312
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1480 ACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACACTTGTGAAACTGAATA 1539
Query 1313 TTGGAAACAATTTCGCTGACATGATATCGCTCCCGAGATCAATAGGCAACCTTGAGATGC 1372
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1540 TTGGAAACAATTTCGCTGACATGGTATCGCTCCCGAGATCAATAGGCAACCTTGAGATGC 1599
Query 1373 TTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTCTACCTGAATCCTTCAAAATGC 1432
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1600 TTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTCTACCTGACTCCTTCAAAATGC 1659
Query 1433 TTACAAAGTTGCGTGTGCTTCGTGCTCAGGAGAATCCACTACA-AGTACCTCCTCGTGAT 1491
||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1660 TTACAAAGTTGCGTGTGTTTCGTGCTCAGGAGAATCCACTACACATT-CCTCCTCGTGAT 1718
Query 1492 ATAGCCGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTGTGGAGACGAGA 1551
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 ATAGCTGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTGTGGAGACGAGA 1778
Query 1552 AATGCGAAATCTCTATTGGTTAAGCCAAAGAAGAGCTGGGTCCAGATGTGCTTCTTCTCC 1611
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 AACGCGAAATCTCTAATGGTTAAGCCAAAGAAGAGCTGGGTCCAGATGTGCTTCTTCTCG 1838
Query 1612 AAATCCAACAAGAGAAAACAGAGCAGCATGGAGATTGTCTAA 1653
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AAATCCAACAAGAGAAAACAGAGCAGCATGGAGATTGTCTAA 1880
> AT2G17440.1 | Symbols: PIRL5 | plant intracellular ras group-related
LRR 5 | chr2:7571140-7573799 FORWARD LENGTH=2091
Length=2091
Score = 767 bits (415), Expect = 0.0
Identities = 869/1084 (80%), Gaps = 47/1084 (4%)
Strand=Plus/Plus
Query 598 GGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATCAGCT 657
||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 738 GGCAATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAGGTATCTGCC 797
Query 658 AAGAAAGCTACTCCAGAGATAAATCTACAGAACAAGTTAACGGATCAAG-TCGAGTGGCT 716
||||||||||||| |||| ||||| | ||| ||| | | | |||||| | |||| |||||
Sbjct 798 AAGAAAGCTACTCAAGAGCTAAATTTGCAGCACAGGCTGATGGATCA-GCTCGAATGGCT 856
Query 717 TCCGGATTCTCTTGGCAAGTTATCGAG-CTTAACTTCGCTTGATTTGTCTGAGAATCACA 775
|||||||||||| |||||||||||||| ||| | ||| ||| ||||||||||| |
Sbjct 857 TCCGGATTCTCTAGGCAAGTTATCGAGTCTTGTCAG-GCTAGATCTGTCTGAGAATTGTA 915
Query 776 TTGTGGTGTTGCCA--AACACTATAGGAGGACTT-TCTTCCTTGACAAAGCTCGATTTGC 832
| |||| | || ||| | |||||||| ||| | ||| ||||| | ||| |||||||
Sbjct 916 TCATGGTACTACCGGCAAC-C-ATAGGAGGGCTTAT-TTCTTTGACGAGGCTTGATTTGC 972
Query 833 ATTCTAACAGAATCGGTCAGCTTCCTGAGTCTATTGGAGAATTGTTGAACTTGGTTTACC 892
|||| || ||||| |||||||| ||||||||||| ||||| ||| | |||||||| |||
Sbjct 973 ATTCGAATAGAATTGGTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGGTCAACC 1032
Query 893 TTAATCTTGGTAGCAACCAGTTATCGT-TGCTGCCTTCAG-CGTTTAGCAGATTGGTGCG 950
| |||||| || | ||||| ||||| | | || || || | | |||| |||||| | |
Sbjct 1033 TGAATCTTAGTGGAAACCAATTATCATCT-CTTCCATC-GTCATTTAATAGATTGATAC- 1089
Query 951 A-CTCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCGATCGGTT 1009
| || ||||| ||||||||||||| ||||| |||| | |||||||||||||| || ||||
Sbjct 1090 ATCTTGAGGAACTTGATTTGAGCTCTAACAGCCTCTCTATTCTCCCTGAATCTATTGGTT 1149
Query 1010 CTCTTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATT 1069
|||| ||||| |||||||||||||| ||||| |||||| | ||||||||||| ||| ||
Sbjct 1150 CTCTCGTGAGCCTAAAGAAGCTCGATGTTGAAACAAATAACATCGAAGAGATTCCACATA 1209
Query 1070 CTAT-TGGTGGATGTTCTTCTC-TGAAAGAACTCCGTGCAGATTATAACAAACTCAAGGC 1127
||| | ||| |||||||| | || ||||||||||||||||||| |||| ||| || ||
Sbjct 1210 GTATCTC-TGGCTGTTCTTC-CATGGAAGAACTCCGTGCAGATTACAACAGACTTAAAGC 1267
Query 1128 TCTTCCTGAAGCTATTGGGAAGATTA-CTACATTAGAGAT-CTTGTCTGTCCGTTACAAT 1185
|||||| |||||| |||||||| ||| |||| |||||||| || | |||||||||| |||
Sbjct 1268 TCTTCCAGAAGCTGTTGGGAAG-TTATCTACCTTAGAGATTCT-GACTGTCCGTTATAAT 1325
Query 1186 AACAT-CAGGCAGTTACCTACGACGATGTCTTCTTTAGCTAACCTCAAAGAGCTGGATGT 1244
||||| | ||||| |||| || || ||||| || | ||||||||||||||||| |||||
Sbjct 1326 AACATTC-GGCAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGT 1384
Query 1245 CAGTTTCAACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACGCTTGTGAA 1304
|||||||||||||| |||||||| ||||||||||| |||| ||||| || ||||| ||
Sbjct 1385 GAGTTTCAACGAGCTTGAGTCAGTACCAGAGAGTTTATGTTATGCCAAAACACTTGTTAA 1444
Query 1305 GCTGAATATTGGAAACAATTTCGCTGACATGATATCGCTCCCGAGATCAATAGGCAACCT 1364
||| || || || |||||||| || || | | ||| |||||| ||| ||||||||||||
Sbjct 1445 GCTTAACATCGGGAACAATTTTGCCAACCTAAGATCACTCCCGGGATTAATAGGCAACCT 1504
Query 1365 TGAGATGCTTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTC-TACC-TGAATCC 1422
||||| ||| |||||||||||||| |||||||| ||||||||| ||| | || | | ||
Sbjct 1505 TGAGAAGCTAGAAGAGCTTGATATGAGCAATAACCAGATCCGT-TTCCTTCCCT-ACTCT 1562
Query 1423 TTCAAAATGCTTACAAAGT-TGCGTGTGCTTCGTGCTCAGGAGAATCCACTACAAGTACC 1481
|| |||| |||| |||| | ||||||| |||| | | | |||||||| ||| | |
Sbjct 1563 TTTAAAACGCTTTCAAA-TCTGCGTGTTCTTCAAACAGAACAAAATCCACTTGAAG-AGC 1620
Query 1482 T-CCTCGTGATATAGCCGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTG 1540
| || | |||||| ||||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct 1621 TTCCAAGGGATATAACCGAAAAAGGCGCACAGGCCGTGGTTCAATACATGAATGATCTTG 1680
Query 1541 TGGAGACGAGAAATGCGAAATCTCTATTGGT-TAAGCC-AAAGAAGAGCTGGGTC--CAG 1596
||||| | ||||| | ||||||| | | |||||| ||| ||||| ||||| |||
Sbjct 1681 TGGAGGCAAGAAACACCAAATCTCAAA-GAACTAAGCCGAAA-AAGAGTTGGGTTAACAG 1738
Query 1597 -ATGTGCTTCTTCTCCAAATCCA--AC-AA---GAGAAAACAGAGCAGCATGGAGATTGT 1649
|| |||||||||| ||| ||| || || |||||||||||||||||||||||| |
Sbjct 1739 TATTTGCTTCTTCTGCAAGTCCTCTACCAACTAGAGAAAACAGAGCAGCATGGAGATCCT 1798
Query 1650 CTAA 1653
||||
Sbjct 1799 CTAA 1802
Score = 148 bits (80), Expect = 1e-34
Identities = 253/330 (77%), Gaps = 38/330 (12%)
Strand=Plus/Plus
Query 52 GAAGAAATCATGAGAATTCACAGATCTCTACCACCAAGACCAG-GAATTGACGAAGTTGA 110
||||||||||||||||||||||||||||||||| ||||||| || | ||||| || ||
Sbjct 216 GAAGAAATCATGAGAATTCACAGATCTCTACCATTGAGACCAGAGA-TCGACGATGTAGA 274
Query 111 AGCTGCCAAGGGT-T-TGATTGACAACGTTGAGAAAG-AAGATC--AAGCTTGTTTAGAA 165
| | || || | | |||| | |||||||| |||| |||||| || | ||||||||
Sbjct 275 AACGGC-AACT-TCTCTGATACAAAACGTTGA-AAAGGAAGATCGGAATC--GTTTAGAA 329
Query 166 GCCATTGCTAAACA-GAGGAAAAGCTCT------GAAGTTCCTGGT-GAGCTTCTCA-TG 216
||||||| ||||| | |||| |||| || |||||| | |||||| ||| ||
Sbjct 330 GCCATTGATAAACTTGTT-AAAACCTCTTCCTCTGAGGTTCCTT-TAGAGCTTTTCAATG 387
Query 217 GTGTTGCAAGAA-ATGAAGAAAGGT-TATGTTCAGTTTC--GTACCAAAGAACAGA-AAC 271
|||| |||| | ||||||||| || | ||||| ||||| | | || |||||||| ||
Sbjct 388 -TGTT-CAAGGAGATGAAGAAAAGTCT-TGTTC-GTTTCCAG-AGCACAGAACAGACAA- 441
Query 272 GAGAAGCTTC-AAAGCTTCTCGATCTGGAAAGTATTCACGCTT-TGTTCGATGATTTCAT 329
|||||||| | ||| |||||||||||||| | | |||| || ||||||| || || ||
Sbjct 442 GAGAAGCTACGAAAA-TTCTCGATCTGGAATCTGTACACG-TTGTGTTCGACGAATTGAT 499
Query 330 TCAAAGAGCTTCTAATCGCATTGCTTCTCC 359
||| ||||||||| | |||||||||||||
Sbjct 500 TCAGAGAGCTTCTTTTTGCATTGCTTCTCC 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5