BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888526
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:168359... 3360 0.0
> AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:16835986-16839375
REVERSE LENGTH=2661
Length=2661
Score = 3360 bits (1819), Expect = 0.0
Identities = 2014/2106 (96%), Gaps = 21/2106 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCCACGCTTCCACTCTGTGCTGCTCTCCGATCTCCCGTCTCTTCCCGGAGATTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 31 ATGGCAGCCACGCTTCCACTCTGTGCTGCCCTCCGATCTCCCGTCTCTTCCCGGAGATTC 90
Query 61 TCGCCGATTCACAAAACCAATGCTCATCTTCAGTAT-AATGTCTTCCTTTCACCGTTGAC 119
| || |||||||||||| | | || | |||||| | |||||| |||||||| | |
Sbjct 91 GCTCCAATTCACAAAACCGACGTTCCTTTTCAGT-TCAATGTCGTCCTTTCA-C-----C 143
Query 120 GTCACCATTGTTCGGTTCCGTCGCTATTCGCGGCAGAATTTTACCGCGTTTACCGGCGGC 179
|| || |||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 144 GT-----TT-TTCGGTTCCGTCGCTATTGGCGGTAGAATTTTCCCGCGTTTACCGGCGGC 197
Query 180 GAAGCAGGAGATTGATCAGCAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 239
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAAGCAGGAGACTGAT---CAGGATGAGGTTGGATTTGATCAGCAGCCGTCTCAGGAGCT 254
Query 240 TACGATAGCGTCGGCGTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 299
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGCGATAGCGTCGGCTTGTTTGGTTGGTGTTCTCACTGGAGTTAGTGTGGTTCTATTCAA 314
Query 300 CAACTGTGTTCACTTGCTTCGAGA-TTTCTCCTGGGATGGGATTCCTGATCGTGGAGCTT 358
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 315 CAACTGTGTTCACTTGCTTCGAGACTTT-TCCTGGGATGGGATTCCTGATCGTGGAGCTT 373
Query 359 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CGTGGCTTAGAGAGGCACCGATCGGTTCCAATTGGTTGCGTGTTATCCTTGTTCCGACTA 433
Query 419 TCGGCGGTTTGGTGGTGAGCGTCCTCAATCAGCTTCGAGAATCTGCCGGAGAATCCAGC- 477
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| | |
Sbjct 434 TCGGCGGTTTGGTGGTGAGCATCCTCAATCAGCTTCGAGAATCTGCTGGAAAATCTA-CT 492
Query 478 GGAGATTCTGATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 537
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGAGATTCTCATTCTAGTCTCGATCGCGTAAAGGCAGTGTTGCGTCCTTTCCTTAAGACT 552
Query 538 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCTAGTGTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 553 GTTGCCGCATGTGTGACGCTTGGGACTGGAAATTCGCTGGGGCCGGAAGGTCCAAGTGTT 612
Query 598 GAAATTGGCGCGTCAATCGCTAAAGGAGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 657
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 613 GAAATTGGAGCGTCAATCGCTAAAGGTGTGAATTCTCTGTTCAATAAAAGTCCTCAGACT 672
Query 658 GGCTTCTCACTTCTTGCTGCTGGCTCAGCGGCTGGAATTTCCTCTGGGTTCAATGCAGCT 717
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 673 GGCTTCTCACTTCTTGCCGCTGGCTCAGCTGCTGGCATTTCCTCTGGGTTCAATGCAGCT 732
Query 718 GTTGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCTACTGATTCA 777
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 733 GTGGCTGGATGCTTCTTTGCAGTTGAATCCGTTTTGTGGCCTTCTTCATCAACTGATTCA 792
Query 778 TCAACATCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 837
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TCAACTTCACTTCCAAACACAACTTCTATGGTTATTCTTAGTGCTGTTACTGCTTCTGTG 852
Query 838 GTGTCGGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 897
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTTTCCGAAATCGGTCTCGGCTCTGAACCTGCGTTTAAGGTTCCTGACTATGACTTCCGC 912
Query 898 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCCTGGTCTCGTTG 957
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 913 TCTCCTGGAGAACTTCCACTCTATCTTTTATTGGGCGCTCTGTGTGGCTTGGTCTCGTTG 972
Query 958 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTCAACAAGGATGTT 1017
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 973 GCATTATCTCGATGTACATCATCCATGACATCTGCTGTTGACAGTCTTAACAAGGATGCT 1032
Query 1018 GGGATACCAAAGGCTGTATTTCCTGTAGTGGGTGGCTTAACTGTTGGAATCATAGCTTTG 1077
||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||
Sbjct 1033 GGGATACCAAAGGCTGTATTTCCTGTAATGGGTGGATTAAGTGTTGGTATCATAGCTTTG 1092
Query 1078 GTATACCCTGAAGTCTTATATTGGGGTTTTCAGAACGTGGATATTTTGTTGGAGAAACGT 1137
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1093 GTATACCCTGAAGTATTATACTGGGGTTTTCAGAATGTGGATATTTTGTTGGAGAAACGT 1152
Query 1138 CCATTTGTAAAGGGCCTGTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAAATAGCT 1197
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1153 CCATTTGTGAAGGGTCTTTCAGCTGATCTTTTGCTTCAGCTGGTAGCGGTCAAGATAGCT 1212
Query 1198 GCAACTGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1257
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCAACCGCATGGTGTCGGGCTTCTGGACTTGTCGGTGGATACTATGCTCCTTCTCTCTTT 1272
Query 1258 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 ATTGGCGGGGCAGCAGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAGAAC 1332
Query 1318 CCTGAAATCAATCTCTCTATCCTGGAAGTAGCATCTCCACAAGCTTATGGTCTGGTTGGA 1377
||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1333 CCTGATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTGGTTGGA 1392
Query 1378 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCGGTACTACTGCTATTT 1437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1393 ATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTT 1452
Query 1438 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GAACTTACACAGGATTATCGTATAGTGTTACCTCTACTGGGAGCTGTAGGCATGTCTTCA 1512
Query 1498 TGGATTACATCTGGACAATcaaagagacaagaaactagagaaacaaaagaaactaggaaa 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TGGATTACATCTGGACAATCAAAGAGACAAGAAACTAGAGAAACAAAAGAAACTAGGAAA 1572
Query 1558 agaaagaaccaagaagCTGTACAGTCTCTGACGTCATCTGATGATGGATTATCAACGAAT 1617
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1573 AGAAAGAGCCAAGAAGCTGTACAGTCTCTGACGTCATCTGATGATGAATCATCAACGAAT 1632
Query 1618 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCACTCAACCAAGCTCAGGAG 1677
||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1633 AACCTTTGTGAAGTTGAAAGTTCTCTTTGCCTTGATGATTCTCTCAACCAATCTGAGGAG 1692
Query 1678 CTGCCGAAGAGTATATTTGTTTCAGAAGCCATGCGAACAAGATTTGCCACAGTTATGATG 1737
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1693 CTGCCGAAGAGTATTTTTGTTTCAGAAGCCATGCGAACAAGATTTGCGACAGTTATGATG 1752
Query 1738 AGCACTTCTTTGGAAGAGACATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1797
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AGCACTTCTTTGGAAGAGGCATTAACTCGTATGCTGATAGAGAAACAATCCTGCGCCTTG 1812
Query 1798 ATTGTTGACCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1857
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 ATTGTTGATCCTGACAATATCTTTCTCGGTATACTTACACTTTCAGACATTCAGGAATTC 1872
Query 1858 AGCAAAGCAAGAAAAGAAGGAAATAAAAGACCCAAGGATATTTTTGTTAATGATATATGT 1917
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1873 AGCAAAGCAAGAAAAGAAGGAAATAATAGACCCAAGGATATTTTTGTTAATGACATCTGT 1932
Query 1918 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 TCGAGGAGTGGAGGAAAATGTAAAGTGCCATGGACTGTTACACCTGATATGGATCTTCTC 1992
Query 1978 GCTGCCCAAACAATCATGAACAAGCATGAAATTTCCCATGTTGCAGTTGTTTCAGGCAGC 2037
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1993 GCTGCCCAAACAATCATGAACAAGCATGAACTTTCTCATGTTGCAGTCGTTTCAGGCAGC 2052
Query 2038 ATTGATGCTCGCAGAATACACCCTGTTGGGGTCCTAGATAGAGAATGTATCACTCTAACG 2097
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2053 ATTGATGCTCCCAGAATACACCCTGTTGGGGTCCTGGATAGAGAATGTATCACTCTAACA 2112
Query 2098 CGCAGG 2103
||||||
Sbjct 2113 CGCAGG 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106525556490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5