BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888528

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35410.2 | Symbols:  | Clathrin adaptor complex small chain ...   276    1e-73
  AT2G17380.1 | Symbols: AP19 | associated protein 19 | chr2:7553...   145    4e-34


> AT4G35410.2 | Symbols:  | Clathrin adaptor complex small chain 
family protein | chr4:16832481-16834002 FORWARD LENGTH=786
Length=786

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 229/265 (86%), Gaps = 16/265 (6%)
 Strand=Plus/Plus

Query  41   TTAGCCGGCAAGGAAAGGTAAGGCTCACCAAATGGTATTCGCCTTACGCACAGAAGGAAA  100
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  114  TTAGCCGGCAAGGAAAGGTAAGGCTCACCAAATGGTATTCTCCTTATGCACAGAAGGAAA  173

Query  101  GATCTAAGCATACATCTCTCATTTTACATGCTATGTATAGGTTATACGTGAACTCAGTGG  160
            ||||||||  || | |  | |    || | | | ||  | || || | |||| || | ||
Sbjct  174  GATCTAAGGTTATA-C-GTGA----AC-T-C-A-GTGGA-GTGATTC-TGAA-TC-GAGG  219

Query  161  -AGTTA-TTCTGCAATTTTGTTGAATGGAGAGGCTACAAAGTTGTTTACAAAAGATATGC  218
                 |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  220  TCCAAAGCTCTGCAATTTTGTTGAATGGAGAGGATACAAAGTTGTTTACAAAAGATATGC  279

Query  219  AAGTCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGGTCCTTGACAT  278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  280  AAGTCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGGTCCTTGAGAT  339

Query  279  CATTCATCACTATGCTGAGATTCTC  303
            |||||||||||||| ||||||||||
Sbjct  340  CATTCATCACTATGTTGAGATTCTC  364


 Score =  202 bits (109),  Expect = 2e-51
 Identities = 117/121 (97%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  305  GGGAGCTTCAAGAGTCAAGCAAGAAAACAGTTGCCAGGATTATATCCGCTCAGGATCAAC  364
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  453  GGGAGCTTCAAGAGTCAAGCAAGAAAACAGTAGCCAGGATTATATCCGCTCAGGATCAAC  512

Query  365  TGGTGGAGGTTGCAAAAGAGGAGACCACTTCGATAAGTAACATAATCGCTCAGGCTACTA  424
            ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct  513  TGGTGGAGGTTGCAAAAGAGGAGGCCAGTTCGATAAGTAATATAATCGCTCAGGCTACTA  572

Query  425  A  425
            |
Sbjct  573  A  573


> AT2G17380.1 | Symbols: AP19 | associated protein 19 | chr2:7553002-7555045 
FORWARD LENGTH=764
Length=764

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 106/120 (88%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  310  CTTCAAGAGTCAAGCAAGAAAACAGTTGCCAGGATTATATCCGCTCAGGATCAACTGGTG  369
            ||||||||||||||||||||||||||||| ||||| ||||| || ||||||||| |||||
Sbjct  487  CTTCAAGAGTCAAGCAAGAAAACAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTG  546

Query  370  GAGGTTGCAAAAGAGGAGACCACTTCGATAAGTAACATAATCGCTCAGGCTACTAAGTAG  429
            || ||||| ||||||||| | | ||| |||||||| ||||| ||||||||||| ||||||
Sbjct  547  GAAGTTGCGAAAGAGGAGGCGAGTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAG  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5