BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888530

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G02870.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   235    3e-61


> AT2G02870.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr2:837812-840129 FORWARD LENGTH=2190
Length=2190

 Score =  235 bits (127),  Expect = 3e-61
 Identities = 150/161 (93%), Gaps = 2/161 (1%)
 Strand=Plus/Plus

Query  312  TGGTAAAAGACCTTTGGAGGTTGTTGGTGAGATTAGACAGACCAAATCACTTAAATTAAT  371
            |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  564  TGGTAAAAGAGCTTTGGAGGTTGTTGGTGAGGTTAGACAGACCAAATCACTTAAATTAAT  623

Query  372  GGGTTTTTCGATTA-CTTATGATAGCGATTCATCTTACTATTCATTGAGTGGTGGGGAGG  430
            |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  624  GGGTTTTTCGATTATCT-ATGATAGCGATTCTTCTGACTATTCATTGAGTGGTGGGGAGG  682

Query  431  TGCAAGCAGATGCTACAATTGGTGATGGCTCATCATCGAGG  471
             |||||| |||||| | |||||||||||||||||||| |||
Sbjct  683  AGCAAGCTGATGCTGCTATTGGTGATGGCTCATCATCAAGG  723



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5