BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888531

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidy...   115    2e-25


> AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidylinositol 
transfer family protein | chr4:18243774-18248805 
REVERSE LENGTH=2321
Length=2321

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 102/119 (86%), Gaps = 11/119 (9%)
 Strand=Plus/Plus

Query  174  CACCGAAACGCTTTCACCGGAGGATTCTTTCGACGGCGACGAAGGAGATGATTACACGAC  233
            ||||||||||||||||||  ||||||||||| |||||| ||||||| |||||||||||||
Sbjct  203  CACCGAAACGCTTTCACCCAAGGATTCTTTCAACGGCGGCGAAGGATATGATTACACGAC  262

Query  234  GGAGACGGATGCGAGGAAGACGATGGCGAAGAGAGGGATAGTGAAATTGACGACCAGTT  292
             | ||  ||    | |  ||||||||| |||||||||||||||||||||||||||||||
Sbjct  263  -G-GA--GA----A-G--GACGATGGCCAAGAGAGGGATAGTGAAATTGACGACCAGTT  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5