BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888546
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35240.1 | Symbols: | Protein of unknown function (DUF630 a... 1960 0.0
> AT4G35240.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr4:16760949-16767087 REVERSE LENGTH=3219
Length=3219
Score = 1960 bits (1061), Expect = 0.0
Identities = 1301/1405 (93%), Gaps = 63/1405 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTGTACAAGTTCTAAGCTTGACGATCTTCCGGCGGTTGCTCTTTGCCGTGAACGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATGGGTTGTACAAGTTCTAAGCTTGACGATCTTCCGGCGGTTGCTCTTTGCCGTGAACGC 296
Query 61 TGTGCTTTCTTAGAAGCAGCTATTCATCAACGTTACGCTTTAGCTGAATCACACGTGGCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGTGCTTTCTTAGAAGCTGCTATTCATCAACGTTACGCTTTAGCTGAATCACACGTGGCT 356
Query 121 TACACTCATTCGCTTAGAGGTATCGGTCATTCTCTCCATCTTTTCATCAACCACCACCAC 180
||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 357 TACACTCATTCGCTTCGAGAAATCGGTCACTCTCTCCATCTTTTCATCAATCACCACCAC 416
Query 181 CGTTTCGTCGCTTCCGGCGGCGCTACCGGT-GCTGATTCTCCTAGACTTAATCTTCCTCC 239
||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||
Sbjct 417 CGTTTCGTCGCTTCCGGCGGCGCTAAC-GTCGGTGATTCTCCTCGACTTAATCTTCCTCC 475
Query 240 TCAGAGAAAAGGTGACCTTGACGATGGCGACGGAGCAACAAATTCACCTaaaaaaaC-AA 298
|||||||||||||||||||||||| ||| |||||||||||| || |||||||| ||
Sbjct 476 TCAGAGAAAAGGTGACCTTGACGA---CGA---AGCAACAAATTC-CCCAAAAAAACAAA 528
Query 299 AGCTTGCTTCTTCT-----C-ACCACAACCACGCTCACTCGGGTTCGGGTTCTGATTCGG 352
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 529 AGCTTGCTTCTTCTCACCACAACCACAACCACGCTCACTCGGGTTCCGGTTCTGATTCGG 588
Query 353 GTCATCTCGAATTCGATTCAGATTCCGACGACGATGAAGAAGA--A-GACGATTTGGATT 409
||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||
Sbjct 589 GTCATCTCGAATTCGATTCAGATTCCGACGAAGATGAAGAAGACGACGACGACTTGGATT 648
Query 410 TGGATTCGTTGCATCACCACTCTCCTCAACACCACCACCATCTCGGCAATTTCCCTATAC 469
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 649 TGGATTCGTTGCATCACCACTCTCCTC--C-CCACCACCATCTCGGCAATTTCCCTATTC 705
Query 470 CCGAATCAGCACAAATGGGTGGATACATGG---AACAACCGGGTTATGT-AACCCGGTAC 525
|||||||||||| |||||| |||||||||| |||||||||||||| | ||||| ||||
Sbjct 706 CCGAATCAGCACCAATGGGCGGATACATGGAACAACAACCGGGTTATATAAACCC-GTAC 764
Query 526 CCGAATCCAGATATGATGGGTCATCTTCCTCCTCCTTACTCTGATGGAGGAGGAAGTTAT 585
|||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 765 CCGAATCCAGATATGATGGGGCA---------TCCTTACTC---TGGAGGAGGAAGTTAT 812
Query 586 ATGCACATGAATTACATGAAGAACAAATCCATGCCTCCTTCAGTTGTCTATGAGCAAAGA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 ATGCACATGAATTACATGAAGAACAAATCCATGCCTCCTTCAGTTGTCTATGAGCAAAGA 872
Query 646 CCAACTAGTCCTCAAAGAGTCTACATAGGCGAATCATCATCTTCATATCCATATCCTCCT 705
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CCAACTAGTCCTCAACGAGTCTACATAGGCGAATCATCATCTTCATATCCATATCCTCCT 932
Query 706 CAAAATCCATATTCTGGATACTCAAATCCAGT------ACCCGG---A-G--ACTACGGT 753
|||||| |||||| |||||||||||||||||| |||||| | | ||||||||
Sbjct 933 CAAAATTCATATTTTGGATACTCAAATCCAGTACCCGGACCCGGACCAGGATACTACGGT 992
Query 754 TCTTC-T-T-CTTCTACAACTGCTGCAGCTACAAAACCGCCACCGCCTCCACCGTCGCCG 810
||||| | | ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 993 TCTTCTTCTGCTTCTACAACTGCTGCAGCAACAAAACCGCCACCACCTCCACCGTCGCCG 1052
Query 811 CCTAGGTCTAACGGTTGGGATTTTTTGAATCCGTTTGATACTTATTATCCTCCGTATACT 870
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1053 CCTAGGTCTAACGGTTGGGATTTTTTGAATCCCTTTGATACTTATTATCCTCCGTATACT 1112
Query 871 CCGAGTCGAGATTCGAGAGAGTTAAGAGAAGAAGAAGGTATACCGGATTTAGAAGACGAT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CCGAGTCGAGATTCGAGAGAGTTAAGAGAAGAAGAAGGTATACCGGATTTAGAAGACGAT 1172
Query 931 GATTCACATTACGAGGTTGTTAAAGAAGTTCACGGGAAACCAAAATTCGCCGGCGGTGGT 990
|||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 1173 GATTCACATTACGAAGTTGTTAAAGAAGTTTACGGCAAACCAAAATTCGCCGCCGGTGGT 1232
Query 991 GGTAATCAACCGAATCCCGCCGCCGTACACATGATGAGGGAAGAGTCTCCGTCTCCGCCG 1050
||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1233 GGTCACCAACCAAATCCCGCCGCCGTACACATGATGAGGGAAGAGTCCCCGTCTCCGCCG 1292
Query 1051 CTTGATAAATCCGGTGCTAGTACAAGCGGTGGAGGTGATATCGGAGATGCGTCTGCGTAT 1110
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1293 CTTGATAAATCCGGTGCTAGTACTAGCGGTGGAGGTGATGTCGGAGATGCATCTGCGTAT 1352
Query 1111 CAGTCTAGACCGAGTGTGTCGGTGGAGAAAGAAGGAATGGAGTATGAAGTTCACGTTGTT 1170
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1353 CAGTCTAGACCAAGTGTGTCGGTGGAGAAAGAAGGGATGGAGTATGAAGTTCACGTTGTT 1412
Query 1171 GAGAAGAAGGTTGTTGAGGATGAGGAACGGCGGAGCAATGCCACGGCGACACGTGGTGGT 1230
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1413 GAGAAGAAGGTTGTTGAAGATGAGGAACGGCGGAGTAATGCCACGGCGACACGTGGTGGT 1472
Query 1231 GGTGGAGGAGGAGGAGGTGGAGGGCCACGTGCGGTGCCTGAGGTTGCGAAAGAGATTGAG 1290
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1473 GGTGGAGGAGGAGG-G--------CCACGTGCGGTGCCTGAAGTTGCGAAAGAGATTGAG 1523
Query 1291 AATCAATTCGTGAAAGCTGCAGAGTCAGGAAGTGAGATTGCTAAGTTACTTGAAGTTGGG 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AATCAATTCGTGAAAGCTGCAGAGTCAGGAAGTGAGATTGCTAAGTTACTTGAAGTTGGG 1583
Query 1351 AAGCATCCTTATGGTCGTAAACATG 1375
|||||||||||||||||||||||||
Sbjct 1584 AAGCATCCTTATGGTCGTAAACATG 1608
Score = 1744 bits (944), Expect = 0.0
Identities = 1054/1107 (95%), Gaps = 7/1107 (1%)
Strand=Plus/Plus
Query 1379 CTTCTTCG--T-CTGCTACTGCTGTTGTGCCGCCTACTTATGCAGATATTGAAGAAGAGC 1435
|||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1666 CTTCTTCGTCTGCTGCTGCTGCTGTTGTGCCACCTACTTATGCAGATATTGAAGAAGAGC 1725
Query 1436 TTGCTTCGAGGTCGAGGAATCTTTCTTCCACATTGCACAAGCTCCATCTTTGGGAGAAGA 1495
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1726 TTGCTTCGAGGTCGAGGAATCTTTCTTCGACGTTGCACAAGCTCCATCTTTGGGAGAAGA 1785
Query 1496 AGCTTTACCATGAAGTCAAGGCTGAGGAAAAATTGCGTCTAGCTCACGAGAAAAAGCTAA 1555
||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct 1786 AGCTTTATCATGAAGTCAAGGCCGAGGAGAAACTGCGTCTAGCTCACGAGAAAAAGCTTA 1845
Query 1556 GGAAGCTAAAGCGTTTGGATGAAAGAGGTGCCGAGGCTATCAAAGTAGATAAAACGCGGA 1615
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GGAAGCTAAAGCGTTTGGATCAAAGAGGTGCCGAGGCTATCAAAGTAGATAAAACGCGGA 1905
Query 1616 GATTAGTGAGAGATATGTCTACGAAAATTCGGATTGCGATTCAGGTTGTCGACAAAATAT 1675
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1906 AATTAGTGAGAGATATGTCCACAAAAATACGGATTGCGATTCAGGTTGTCGACAAAATAT 1965
Query 1676 CTGTAACGATTAATAAGATAAGAGACGAAGACCTGTGGCCGCAACTGAATGCATTGATTC 1735
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 CCGTGACGATTAATAAGATAAGAGACGAAGACCTGTGGCCGCAACTGAATGCATTGATTC 2025
Query 1736 AAGGGCTTACAAGAATGTGGACATCTATGCTTGAGTGTCATCAAAGTCAGTGTCAAGCTA 1795
||||||||||||||||||||| | | |||||||| |||||||||||||| ||||||||||
Sbjct 2026 AAGGGCTTACAAGAATGTGGAAAACAATGCTTGAATGTCATCAAAGTCAATGTCAAGCTA 2085
Query 1796 TTAGGGAAGCACAAGGTTTGGGACCGATAAGAGCAAGCAAGAAACTCGGCGATGAACATC 1855
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 2086 TTAGGGAAGCACAAGGTTTAGGCCCGATAAGAGCAAGCAAGAAACTAGGCGATGAACATC 2145
Query 1856 TAGAGGCGACGAGTTTGCTTGGACATGAACTTATTAATTGGATATTGGGATTCTCTAGCT 1915
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 TAGAAGCGACGAGTTTGCTTGGACATGAACTTATTAATTGGATATTGGGATTCTCTAGCT 2205
Query 1916 GGGTTAGCGCACAGAAGGGTTATGTAAAAGAGTTGAATAAATGGCTCATGAAATGTCTTC 1975
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 GGGTTAGTGCGCAGAAGGGTTATGTAAAAGAGTTGAATAAATGGCTCATGAAATGTCTTC 2265
Query 1976 TGTATGAACCTGAGGAAACACCTGATGGGATCGTTCCTTTTTCACCTGGTCGGATTGGGG 2035
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 2266 TGTATGAACCTGAGGAAACACCTGATGGGATAGTTCCCTTTTCACCTGGTAGGATTGGGG 2325
Query 2036 CTCCACCAATCTTTGTAATCTGTAACCAATGGTCTCAAGCTCTGGATAGGATATCCGAGA 2095
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2326 CTCCACCTATCTTTGTCATCTGTAACCAATGGTCTCAAGCTCTGGATAGGATATCTGAGA 2385
Query 2096 AGGAAGTTATTGAGGCAATGCGTAGTTTCACTACAAGCGTGCTTCAGCTTTGGGAACAAG 2155
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2386 AGGAAGTTATTGAGGCAATGCGTAGTTTCACTACAAGTGTGCTTCAGCTTTGGGAACAAG 2445
Query 2156 ATCGGTTAGATACGATGATGACAGGGCACGGGGATTCAGAGAAGAAAGTTAGGAACATGG 2215
|||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct 2446 ATCGGTTAGATACGATGATGACGGGGCATGGTGATTCAGAGAAGAAAGTCAGGAACATGG 2505
Query 2216 ACCGAGAAGAACAGAGGATACAGAGAGAGATTCAAGCATTGGAAAAGAAAATGATTCTTG 2275
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 ACAGAGAAGAACAGAGGATACAGAGAGAGATTCAAGCATTGGAAAAGAAAATGATTCTTG 2565
Query 2276 TGGCACCGGGTGATGGTAATAGTCTTTCGATATCCGGTAACATTGTCTACCAAAGCGATA 2335
||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||
Sbjct 2566 TGGCACCGGGTGATGGTAACAGTCTTTCGATATCCGGCAACGTTGTTTACCAAAGCGATA 2625
Query 2336 CTAGCAGCGATAGTTTACAAGGTAGTTTGCAACGGATTTTTGAAGCTATGGAGAGATTCA 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2626 CTAGCAGCGATAGTTTACAAGGTAGTTTGCAACGGATTTTTGAAGCTATGGAGAGATTCA 2685
Query 2396 CTGCTGAATCTATGAGAGCTTATGAGGATCTCTT-GAAGCGCACCGAA-GAAGAAACTGC 2453
|||||||||| ||||||||||||||||||||||| || ||||||| || |||||||||||
Sbjct 2686 CTGCTGAATCGATGAGAGCTTATGAGGATCTCTTAGA-GCGCACC-AATGAAGAAACTGC 2743
Query 2454 TCCACGAGAACTTGAGGAAGAAGAGGA 2480
||||| ||||||||||||||||||||
Sbjct 2744 ACCACGGGAACTTGAGGAAGAAGAGGA 2770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123260178951
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5