BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888563

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35060.1 | Symbols: HIPP25 | Heavy metal transport/detoxific...   745    0.0  


> AT4G35060.1 | Symbols: HIPP25 | Heavy metal transport/detoxification 
superfamily protein  | chr4:16685720-16686703 REVERSE 
LENGTH=900
Length=900

 Score =  745 bits (403),  Expect = 0.0
 Identities = 443/462 (96%), Gaps = 3/462 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTGTTCTTGATCACGTCTCTGAATATTTCGATTGCTCCCATGG-A--TCCAAGAGA  57
            |||||||||||||||||||||||||||||||||||||| || ||||| |  |||||||||
Sbjct  285  ATGGGTGTTCTTGATCACGTCTCTGAATATTTCGATTGTTCTCATGGAAGCTCCAAGAGA  344

Query  58   CACAAAAGTCTACAGACGGTGGATGTGAGGGTTTTGATAGACTGTGAAGGATGCGAGAGG  117
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  345  CACAAAAGTCTACAGACGGTGGATGTGAGGGTTTTGATAGATTGTGAAGGATGCGAGAGG  404

Query  118  AAAGTGAGGAGAGCCTTAGAAGGAATGAGAGGAGTAAGAGATGTAACCATCGAGCCAAAT  177
            ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  405  AAAGTAAGGAGAGCTTTAGAAGGAATGAGAGGAATAAGAGATGTAACCATCGAGCCAAAT  464

Query  178  GCTCAGAAAGTGACAGTGGTTGGGTACGTTGAGCCAAACAAAGTGGTGGCTCGGATCATT  237
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  465  GCTCAGAAAGTGACAGTGGTTGGGTACGTTGAACCAAACAAAGTGGTGGCTCGTATCATT  524

Query  238  CACCGGACCGGTAAAAGAGCCGAGTTATATCCTTTTGTTCCTTACGACGTTGTGGCTCAT  297
            ||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct  525  CACCGAACCGGTAAAAGAGCAGAGCTATATCCTTTCGTTCCTTACGACGTTGTGGCTCAT  584

Query  298  CCTTACGCGTCTGGTGTGTACGATAACAGAGCCCCGACTGGGTACGTTAGGAACACCGAG  357
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  585  CCTTACGCGTCTGGTGTTTACGATAACAGAGCCCCGACTGGGTACGTTAGGAACACCGAG  644

Query  358  TATGATCCTCATGTGTCACGGCTTGCACGTGCTAGCTCCACTGAGGTTCGTTATACTACG  417
            |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  645  TATGATCCACATGTGTCACGTCTCGCACGTGCTAGCTCCACTGAGGTTCGTTATACTACG  704

Query  418  GCGTTTAGCGACGAGAACGCCTCCGCTTGTGTTGTTATGTGA  459
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  705  GCGTTTAGCGACGAGAACGCCTCCGCTTGTGTTGTTATGTGA  746



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5