BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888595
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0... 815 0.0
AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 643 0.0
AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type... 527 4e-149
AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V... 444 4e-124
> AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0
complex, subunit C protein | chr4:16567824-16569295 REVERSE
LENGTH=1024
Length=1024
Score = 815 bits (441), Expect = 0.0
Identities = 478/496 (96%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
Query 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 370
Query 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 371 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCT 430
Query 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 431 TGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTC 490
Query 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTT-GC 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 491 AGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTAT-TTTCGC 549
Query 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCA 479
||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 550 AGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCA 609
Query 480 GTCTAGAGCGGAATGA 495
||||||||| ||||||
Sbjct 610 GTCTAGAGCTGAATGA 625
> AT2G16510.1 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr2:7159629-7160892 REVERSE LENGTH=954
Length=954
Score = 643 bits (348), Expect = 0.0
Identities = 448/497 (90%), Gaps = 4/497 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 82 ATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGCGCCGCCGCC 141
Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 142 GCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTG 201
Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 202 GCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGTTATG 261
Query 181 GCTGGTGTTTTGGGTATCTATGGA-TTGATCATTGCTGTTATCATCAGTACCGGGATTAA 239
||||||||||||||||| |||||| || || |||||||||||||| |||||||| || ||
Sbjct 262 GCTGGTGTTTTGGGTATTTATGGACTT-ATTATTGCTGTTATCATTAGTACCGGCATCAA 320
Query 240 CCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGC 299
|| |||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 321 TCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGC 380
Query 300 TTGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGT 359
||||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 381 TTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGATGCGGGTGT 440
Query 360 CAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTTGC 419
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 441 TAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCTTATCTTTGC 500
Query 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTT-TCCTCACGAGCTGGCC 478
|||||||||||||| ||||| || ||||| || ||||| || || || |||||||| |
Sbjct 501 GGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATT-TTATCTTCTCGAGCTGGTC 559
Query 479 AGTCTAGAGCGGAATGA 495
|||| ||||| ||||||
Sbjct 560 AGTCCAGAGCAGAATGA 576
> AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type
H(+)-ATPase C3 | chr4:18147211-18149267 FORWARD LENGTH=1028
Length=1028
Score = 527 bits (285), Expect = 4e-149
Identities = 429/499 (86%), Gaps = 8/499 (2%)
Strand=Plus/Plus
Query 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
|||||||| ||||| |||||||| || ||||| |||||||||||||| ||||| || ||
Sbjct 120 ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCT 179
Query 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
|| ||||||||||| |||||||||||||| || || || |||||||||||||| || |||
Sbjct 180 GCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTG 239
Query 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
|| |||||||| || |||||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct 240 GCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATG 299
Query 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 300 GCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAAC 359
Query 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300
||||||||||| || ||||||||||| || ||||| || ||||| || ||||||||||||
Sbjct 360 CCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGCTCATCTCTCTTCTGGTCTTGCT 419
Query 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360
||||| || ||||||||||||||||| |||||||| || || || || ||||| ||||||
Sbjct 420 TGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTC 479
Query 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTT-GTCGGGATGATTCTTATCCTTATCTTT-G 418
||||| |||||||| ||||| ||||| ||| || || |||||||||||||| || ||| |
Sbjct 480 AGGGCCAATGCTCAACAGCCAAAGCT-TTTCGTTGGTATGATTCTTATCCTCAT-TTTCG 537
Query 419 CAGAAGCGCTCGCTCTCTACGGGCTTATTGT-GGGAATCATCCTT-TCCTCACGAGCTGG 476
| ||||| || ||||| ||||| || || || |||| |||| || ||||| ||||||||
Sbjct 538 CTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGA-TCATT-TTGTCCTCCCGAGCTGG 595
Query 477 CCAGTCTAGAGCGGAATGA 495
||||| ||||| ||||||
Sbjct 596 TCAGTCCAGAGCCGAATGA 614
> AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0
complex, subunit C protein | chr1:6913229-6914594 FORWARD
LENGTH=858
Length=858
Score = 444 bits (240), Expect = 4e-124
Identities = 406/488 (83%), Gaps = 4/488 (1%)
Strand=Plus/Plus
Query 10 TTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCCGCACTCGTC 69
||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||| |||||
Sbjct 101 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTT 160
Query 70 TTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATG 129
||||||||||||||||| || || || || || ||||| || |||||||| || || |||
Sbjct 161 TTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATG 220
Query 130 GGAGTTATGAGGCCTGAG-TTGGTCATGAAATCTATTGTCCCTGTTGTTATGGCTGGTGT 188
|| || ||||| || ||| || || |||||||| ||||| ||||||||||||||||| ||
Sbjct 221 GGTGTGATGAGACCAGAGCTT-GTGATGAAATCGATTGTTCCTGTTGTTATGGCTGGAGT 279
Query 189 TTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGC 248
||| ||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 280 TTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATCAACCCTAAGGC 339
Query 249 TAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCTTGTGGTCT 308
||||||||||| || || ||||| || || ||||| || || |||||||||||||||||
Sbjct 340 CAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCT 399
Query 309 TGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTCAGGGCAAA 368
|||||||| || || || ||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 400 CGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAA 459
Query 369 TGCTCAGCAGCCTAAGCTCTTTGTCGGGA-TGATTCTTATCCTTATCTTTGCAGAAGCGC 427
||| || || |||||| | ||||| |||| ||||||| || || |||||||| ||||| |
Sbjct 460 TGCACAACAACCTAAGTTGTTTGT-GGGAATGATTCTGATTCTCATCTTTGCTGAAGCAC 518
Query 428 TCGCTCTCTACGGGCTTATTGTGGGAATCATCCTTTCCTCACGAGCTGGCCAGTCTAGAG 487
| || || ||||| || ||||| || |||||||| || || |||||||| ||||||||||
Sbjct 519 TTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGAG 578
Query 488 CGGAATGA 495
| || |||
Sbjct 579 CCGAGTGA 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5