BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888609
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34570.1 | Symbols: THY-2 | thymidylate synthase 2 | chr4:16... 2771 0.0
AT2G16370.1 | Symbols: THY-1 | thymidylate synthase 1 | chr2:70... 1596 0.0
> AT4G34570.1 | Symbols: THY-2 | thymidylate synthase 2 | chr4:16511001-16514343
REVERSE LENGTH=1957
Length=1957
Score = 2771 bits (1500), Expect = 0.0
Identities = 1633/1699 (96%), Gaps = 2/1699 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTGTTTGCAAAACTCCGCAAAGATTCTACCTTTAGCGTTTAAATCGGCTTTGTTA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 132 ATGAGGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCGGCATTGCTG 191
Query 61 CCTTTGTCTCAAAGGTGGTTCTGTAAATTTTCTCCTAAGCCATCCTCTTTGGCAAACATC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 192 CCTTTGTCTCAAAGGTGGTTCTGTAAATTTTCTCCTAAGCCATCCTCATTGACAAACATT 251
Query 121 TTCAAGGTTTCAGTTTCAACCATGGCCAACACTCTCAATGGAAATGTGATCATGCCTTCA 180
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 252 TTCAAGGTTTCAATTTCAACCATGGCAAACACTCTCAATGGAAATGTGATCATGACTTCA 311
Query 181 AAACCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTATTGGTAAA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAGCCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTATTGGTAAA 371
Query 241 GACGGAAAACTTCCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGATTTAACTTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GACGGAAAACTTCCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGATTTAACTTTG 431
Query 301 ACCACTTCGGATTCTGCTAAGAAGAACGCTGTTGTAATGGGTAGGAAAACGTGGGAGTCT 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 432 TCCACTTCGGATTCTGCTAAGAAGAACGCTGTTGTTATGGGTAGGAAAACGTGGGAGTCT 491
Query 361 ATTCCCACAAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTTGACTCGTTCAAGC 420
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 492 ATTCCCAAAAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTTGTCTCGTTCTAGC 551
Query 421 GGTGTCGATATAGCCAACACTGAGAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTG 480
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 552 GGTTTCGATATAGCCAACACTGAAAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTA 611
Query 481 GACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAGGTGTTTGTAATAGGAGGT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 612 GACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGT 671
Query 541 GGCGACATATTGAGGGAAGCGTTGAATGGACCGAGCTGTGAAGCCATCCACTTAACGGAG 600
|||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |||
Sbjct 672 GGCGACATATTGAGGGAAGCTTTGAATAAACCGAGCTGTGAAGCCATCCACATAACTGAG 731
Query 601 ATTGATACAAGTATTGACTGTGATACATTTATTCCCGCGGTTGACACATCTGCATATCAG 660
|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 732 ATTGATACAAGTATCGACTGTGATACATTTATTCCCACGGTTGACACTTCTGCATATCAG 791
Query 661 CCTTGGTGTTCGTCATTTCCAATATGTGAAAATGGACTTCGATTTTCCTTCACGACTTAT 720
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 792 CCTTGGTGTTCGTCGTTTCCAATATGTGAAAATGGTCTTCGATTTTCCTTCACGACTCAT 851
Query 721 GTTCGTGTAAAGAGTTCTTCTGCCTGTGAATCCTCTGATGTGAGTGATGGGTCAAAGGTC 780
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 852 GTTCGTGTAAAGAGTTCTTCTGCCGGTGAAGCCTCTGATGAGAGTGATGGGTCAAAGGTT 911
Query 781 CTTCAAGTTGATTGGAAAAAGTTTTCTTCTTTTCTTCCTAAGATGATTTTTGACCGTCAT 840
||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||
Sbjct 912 CTTCAAGTTGATTGGAAGAAGTTTTCTTCTGTTCTTCCTAAAATGATTTTTGACCGGCAT 971
Query 841 GAAGAATTTCTATACTTGAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAGGGC 900
|| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 972 GAGGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGAC 1031
Query 901 GATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGC 1091
Query 961 AGGAATTTCCCACTTCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTT 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AGGAATTTTCCACTTCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTT 1151
Query 1021 CTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATA 1211
Query 1081 TGGGATGGGAATGCGTCGAGAGCATATCTTGATGGTATTGGACTGACTGAGAGAGAAGAA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1212 TGGGATGGGAATGCGTCGAGAGCATATCTTGATGGTATTGGACTGACTGAGAGAGAGGAA 1271
Query 1141 GGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGAT 1331
Query 1201 ATGCATGCTGATTATACGGGGCAAGGATTTGATCAGCTCTTAGATGTAATTCACAAGATC 1260
||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1332 ATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATC 1391
Query 1261 AAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAG 1320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1392 AAGAACAATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAG 1451
Query 1321 CTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTG 1380
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1452 CTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTT 1511
Query 1381 TCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCA 1440
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1512 TCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCC 1571
Query 1441 TCATACTCCCTTCTTACATGCATTCTCGCTCACGTCTGTGATCTTGTTCCTGGTGATTTT 1500
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1572 TCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGATCTTGTTCCTGGTGATTTT 1631
Query 1501 ATCCATGTGATTGGAGATGCTCATGTTTACAAAAACCATGTCAGGCCTCTGCAAGAGCAA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 ATCCATGTGATTGGAGATGCTCATGTTTACAAAAACCATGTCAGGCCTCTGCAAGAGCAA 1691
Query 1561 CTTCAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATAAAACCGGAGAAGAAAGATATA 1620
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1692 CTTGAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATAAATCCAGAGAAGAAAGATATA 1751
Query 1621 GATTCTTTTGT-GTCGGATGACTTCGAGCTCATTGGCTATGATCCTCACAAGAAAATAGA 1679
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1752 GATTCTTTTGTTG-CGGATGACTTTGAGCTCATTGGCTATGATCCTCACAAGAAAATAGA 1810
Query 1680 TATGAAAATGGCGGTTTAG 1698
|||||||||||| ||||||
Sbjct 1811 TATGAAAATGGCTGTTTAG 1829
> AT2G16370.1 | Symbols: THY-1 | thymidylate synthase 1 | chr2:7081783-7084557
REVERSE LENGTH=1924
Length=1924
Score = 1596 bits (864), Expect = 0.0
Identities = 1382/1627 (85%), Gaps = 55/1627 (3%)
Strand=Plus/Plus
Query 101 CATCCTCT-TTGGCAAACATCTTCAAGG-TTTCAGTTTCAACCATGGC--CAAC-ACTCT 155
|||| ||| || |||| |||| ||||| ||| | |||| || ||||| |||| |||||
Sbjct 69 CATCATCTATT-GCAAGTATCTCCAAGGTTTTGA-TTTCCACAATGGCAACAACTACTCT 126
Query 156 CAATGGA-AATGT---GA-T-CA--TGCCTTCAAAACCTCAGAGTACTTACCAAGTTGTG 207
|||| || | ||| | | || || ||||| | ||||| || ||||||||||||||
Sbjct 127 CAAT-GACAGTGTCACCACTACACTTG-CTTCAGAGCCTCAAAGGACTTACCAAGTTGTT 184
Query 208 GTAGCTGCAACCAAGGAAATGGGTATTGGTAAAGACGGAAAACTT-CCATGGAATTTGCC 266
|| |||||||| || |||||||||||||||||||| || ||| || ||||||||||||||
Sbjct 185 GTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAA-TTGCCATGGAATTTGCC 243
Query 267 TACCGATCTCAAGTTCTTCAAGGA-TTTAACTTTGACCACTTCGGATT-CTGCTAAGAAG 324
|| |||||||||||||| || || || |||||||||||||| |||| || |||||||
Sbjct 244 AACAGATCTCAAGTTCTTTAAAGACATT-ACTTTGACCACTTCAGATTCCT-CTAAGAAA 301
Query 325 AACGCTGTTGTAATGGGTAGGAAA-ACGTGGGAGTCTATTCCCACAAAGTATAGGCCACT 383
|| |||||||| ||||||| |||| || |||||||||||||||| ||||||||||| ||
Sbjct 302 AATGCTGTTGTGATGGGTA-GAAAGACTTGGGAGTCTATTCCCATTAAGTATAGGCCGCT 360
Query 384 CTCTGGTCGCCTGAATGTTG-TCTTGACTCGTTCAAG-CGGTGTCGATATAGCCAACACT 441
|| ||||| || || |||| || | |||||||| | ||| | |||||||||||||||
Sbjct 361 TTCGGGTCGGCTTAACGTTGTTC-TAACTCGTTCTGGTGGGT-TTGATATAGCCAACACT 418
Query 442 GAGAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTGGACTTATTAGCTGCACCTCCG 501
||||||||||| ||||| ||||| ||||||||||||| || || |||||||| || |||
Sbjct 419 GAGAATGTTGTCACTTGTAGTAGTGTAGATTCTGCTCTTGATTTGTTAGCTGCGCCGCCG 478
Query 502 T-TTAGTCTGTCCATTGAGAAGGTGTTTGTAATAGGAGGTGGCGACATATTGAGGGAAGC 560
| || || | || ||||||| ||| ||||| ||||||||||| |||||||||||||||||
Sbjct 479 TATT-GTTTATCTATTGAGAGGGTTTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 537
Query 561 GTTGAAT-GGACCGAGCTGTGAAGCCATCCACTTAACGGAGATTGATACAAGTATTGACT 619
|||||| || || || ||||| || ||||| ||||| ||||||||||||||| ||||||
Sbjct 538 ATTGAATAGG-CCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTGTTGACT 596
Query 620 GTGATACATTTATTCCCGCGGTTGACACATCTGCATATCAGCCTTGGTGTTCGTCATTTC 679
||||||| ||||| || ||| |||| || |||| ||||||||||||| ||| || ||||
Sbjct 597 GTGATACGTTTATACCTGCGATTGATACTTCTGTTTATCAGCCTTGGTCTTCATCGTTTC 656
Query 680 CAATATGTGAAAATGGACTTCGATTTTCCTTCACGACTTATGTTCGTGTAAAGAGTTCTT 739
|| || ||||||||||||||| |||| ||||||||||| ||| ||||||||||| ||
Sbjct 657 CAGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAGAG---TT 713
Query 740 CTGCCTG-TGAATCCTCTGATGTGAGTGATGGGTCAAAGGTC-CTTCAAGTTGATTGGAA 797
||| ||| |||||| ||||||| || |||||||| | ||| |||||| ||||| ||||
Sbjct 714 CTG-CTGATGAATCTTCTGATGAAAGCAATGGGTCACA-GTCTCTTCAATTTGATGGGAA 771
Query 798 AAAGTTTTCTTCTTTTCTTCCTAAGATGATTTTTGA-CCGTCATGAAGAATTTCTATACT 856
||| ||| || ||||||||||||||| ||||||| | | ||||| || ||||| || |
Sbjct 772 GAAG-TTT-TT-GTTTCTTCCTAAGATGGTTTTTGATCAG-CATGAGGAGTTTCTGTATT 827
Query 857 TGAATCTGGTCAAAGAGATAATCTCAAATGGAAACT-TAAAGGGCGATAGGACAGGGACT 915
||||| |||| |||| || ||||| ||||| || | | ||| |||||||| ||||||
Sbjct 828 TGAATATGGTTGAAGATATTATCTCTAATGGCAA-TGTGAAGAATGATAGGACCGGGACT 886
Query 916 GGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGCAGGAA-TTTCCCACT 974
||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |||||
Sbjct 887 GGTACATTATCAAAATTTGGTTGCCAGATGAAATTCAATTTACGCA-GAAGTTTTCCACT 945
Query 975 TCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAG 1034
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TCTGACAACAAAGCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAG 1005
Query 1035 CGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATATGGGATGGGAATGC 1094
|||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||
Sbjct 1006 CGGTTCAACCAATGCAAAAGTCCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGC 1065
Query 1095 GTCGAGAGCA-TATCTTGATGGTATTGGACTGACTGAGAGAGAAGAAGGTGACCTTGGAC 1153
||| |||| | ||||| |||||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 1066 GTCAAGAG-AGTATCTCGATGGTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGAC 1124
Query 1154 CCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATT 1213
| || || |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATT 1184
Query 1214 ATACGGGGCAAGGATTTGATCAGCTCT-TAGATGTAATTCACAAGATCAAGAACAATCCT 1272
|||| || |||||||||||||| || | ||||||||||| |||| |||||||||||||||
Sbjct 1185 ATACTGGTCAAGGATTTGATCAACT-TGTAGATGTAATTGACAAAATCAAGAACAATCCT 1243
Query 1273 GATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTT 1332
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1244 GATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTT 1303
Query 1333 CCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTCATGTCAAATG 1392
||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||||||||
Sbjct 1304 CCTCCATGCCATATGTTTGCACAATTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATG 1363
Query 1393 TATCAGCGCTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCATCATACTCCCTT 1452
|||||||| ||||| |||||||| || || || || ||||||||||| || ||||| |||
Sbjct 1364 TATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTT 1423
Query 1453 CTTACATGCATTCTCGCTCACGTCTGTGATCTTGTTCCTGGTGATTTTATCCATGTGATT 1512
||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1424 CTTACTTGCATGCTGGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTCTT 1483
Query 1513 GGAGATGCTCATGTTTACAAAAAC-CATGTCAGGCCTCTGCAAGAGCAACTTCAGAACCC 1571
|| ||||||||||| ||||||| | || || |||||||||||||||||||||| ||| |
Sbjct 1484 GGGGATGCTCATGTATACAAAA-CTCACGTGAGGCCTCTGCAAGAGCAACTTCTGAATCT 1542
Query 1572 ACCAAAACCTTTTCCTGTTTTGAAGATAAAACCGGAGAAGAAAGATATAGATTCTTTTGT 1631
|||||||| |||||||| |||||||||| |||||||||||| | || |||||||||||
Sbjct 1543 TCCAAAACCCTTTCCTGTAATGAAGATAAACCCGGAGAAGAAACAAATCGATTCTTTTGT 1602
Query 1632 GTCGGATGACTTCGAGCTCATTGGCTATGATCCTCACAAGAAAATAGATATGAAAATGGC 1691
| | |||||| || |||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1603 GGCTTCTGACTTTGACCTCACAGGCTATGATCCTCACAAGAAGATAGAAATGAAAATGGC 1662
Query 1692 GGTTTAG 1698
|||||||
Sbjct 1663 GGTTTAG 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5