BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888624
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34440.1 | Symbols: | Protein kinase superfamily protein | ... 3110 0.0
> AT4G34440.1 | Symbols: | Protein kinase superfamily protein
| chr4:16465828-16468956 FORWARD LENGTH=2317
Length=2317
Score = 3110 bits (1684), Expect = 0.0
Identities = 1912/2021 (95%), Gaps = 19/2021 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGACTCGCCGGTGGATTCACCTCCTGCCCCTGAAACCTCAAATGGGACACCGCCC 60
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 97 ATGGCGGACTCACCGGTGGATTCATCTCCTGCCCCTGAAACCTCAAATGGGACACCACCG 156
Query 61 TCAAACGGGACATCGCCGTCGAATGAGTCATCGCCGCCAACACCACCTTCTTCACCACCA 120
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 157 TCAAACGGAACATCGCCGTCTAATGAGTCATCGCCGCCAACACCACCTTCTTCACCACCA 216
Query 121 CCATCATCAAAATCTGCTCCTCCGCCAGATAGCTCCGCTTCTTCTTCACCGCCGCCTGCA 180
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 217 CCATCATCAATATCTGCTCCTCCGCCAGATATCTCCGCTTCTTTTTCACCGCCGCCTGCA 276
Query 181 CCACCAACGCAAGAAACCTCACCTCCTCCATCTTCGTCCTCATCCCCGCCTGTTGTAGCT 240
||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 277 CCACCAACGCAAGAAACGTCACCTCCTACATCTCCGTCCTCATCGCCGCCTGTTGTAGCT 336
Query 241 AATCCGCCACCGCAAACTCCAGAGAATCCTTCTCCACCTGCACCTGAAGGCTTTACTCCG 300
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 337 AATCCGTCACCGCAGACTCCAGAGAATCCTTCTCCACCTGCACCTGAAGGCTCAACTCCT 396
Query 301 GTAACGCCACCGGCACCACCACAAACACCGTCGAACCAATCACCGCCTTTAGAAAGACCA 360
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 397 GTAACGCCACCTGCACCACCACAAACACCGTCGAACCAATCACCG------GAAAGACCA 450
Query 361 ACTCCTCCTTCTCCTGGTGCCAATGATGACCGTAACAGAACCAAT---GG---TAATAAC 414
|||||||||||||||||||||||||||||||| |||||||||||| || || |||
Sbjct 451 ACTCCTCCTTCTCCTGGTGCCAATGATGACCGAAACAGAACCAATGGCGGAAACAACAAC 510
Query 415 AGAGATGGTTCCACACCTTCACCACCGTTGTCTGGGAACAGAACTTCCGGTGATGGTAGC 474
||||| || |||||||| |||||||||| ||| |||||||||||||||||||| ||| ||
Sbjct 511 AGAGACGGCTCCACACCATCACCACCGTCGTCAGGGAACAGAACTTCCGGTGACGGTGGC 570
Query 475 TCACCTTCACCACCTCGGTCAATAAGCCCTCCTCGGAATAGTGGAGATTCAGACTCATCA 534
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 571 TCACCTTCACCACCTCGGTCGATAAGCCCTCCTCAGAATAGTGGAGATTCAGACTCATCA 630
Query 535 TCGGGTAATCATCCACAAGCCAACATTGGATTGATTATTGGAGTCCTTGTAGGAGCAGGG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCGGGTAATCATCCACAAGCCAACATTGGATTGATTATTGGAGTCCTTGTAGGAGCAGGG 690
Query 595 CTTTTGCTTCTACTT-CTAGTGTGTATTTGCATCTGTTGCAACAAGAAGAAGAAGAAAAA 653
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 691 CTTTTGCTTCTACTTGC-AGTGTGTATTTGCATCTGTTGCAACAGGAAGAAGAAGAAGAA 749
Query 654 ATCTCCTCAGGTCAACCACATGCACTACTACAATAACAATCCTTATGGTG---CACCCTC 710
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 750 ATCTCCTCAGGTCAACCACATGCACTACTACAATAACAATCCTTATGGAGGAGCACCCTC 809
Query 711 AGGTAATGGTGGTTATTACAAGGCAACACCTCAGGATCATGTGGTGAATATGGCTGGTCA 770
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 810 AGGTAATGGTGGTTATTACAAGGGAACACCTCAAGATCATGTGGTGAATATGGCTGGTCA 869
Query 771 AGGAGGTGGAAATTGGGGTCCACAGCAACCTGTGTCCGGTCCTCACAGTGACACTTCCAA 830
||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 870 AGGAGGTGGGAATTGGGGTCCACAGCAACCTGTGTCTGGTCCTCACAGTGATGCTTCCAA 929
Query 831 CTTAACTGGTCGAACAGCTACACCCTCACCTCAAGCTGCGACTCTTGGTCACAACCAAAG 890
|||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 930 CTTAACCGGTCGAACTGCTATACCGTCACCTCAAGCTGCAACTCTTGGTCACAACCAAAG 989
Query 891 CACTTTCACCTACGATGAATTGTCCATTGCAACAGAAGGTTTCGCTCAGTCAAATTTGTT 950
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 990 CACTTTCACATACGATGAACTGTCCATTGCAACAGAAGGTTTCGCTCAGTCAAATTTGCT 1049
Query 951 AGGGCAAGGAGGATTTGGGTATGTTCATAAAGGAGTTTTGCCTGGTGGCAAAGAAGTTGC 1010
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1050 AGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGGCAAAGAAGTTGC 1109
Query 1011 AGTGAAGAGTCTTAAACTTGGAAGCGGACAAGGTGAACGCGAGTTTCAAGCAGAGGTTGA 1070
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1110 AGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCAAGCAGAGGTTGA 1169
Query 1071 TATCATTAGCCGTGTCCATCATCGTCATCTCGTATCTCTTGTTGGATATTGCATTTCTGG 1130
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1170 TATCATTAGCCGTGTCCATCATCGTCATCTCGTTTCTCTTGTTGGATATTGCATCTCTGG 1229
Query 1131 TGGTCAAAGGCTTTTGGTTTATGAGTTTATACCTAATAACACTCTTGAATTTCATCTTCA 1190
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1230 TGGTCAAAGACTTTTGGTTTATGAGTTTATACCTAACAACACTCTTGAATTTCATCTTCA 1289
Query 1191 CGGAAAGGGTCGTCCGGTTCTGGATTGGCCTACACGAGTCAAGATTGCATTGGGATCAGC 1250
|||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1290 TGGAAAGGGTCGTCCGGTTTTGGATTGGCCTACAAGAGTGAAGATTGCATTGGGATCAGC 1349
Query 1251 TAGAGGTCTTGCATATTTGCATGAAGACTGCCATCCTCGCATTATCCATAGAGATATTAA 1310
|||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct 1350 TAGAGGCCTTGCATATTTGCATGAAGACTGTCACCCTCGCATTATCCACAGAGATATCAA 1409
Query 1311 AGCTGCAAACATTCTTCTTGATTTCAGTTTTGAAACCAAGGTTGCAGATTTTGGATTAGC 1370
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1410 AGCTGCAAACATTCTTCTTGATTTCAGTTTTGAGACCAAGGTGGCAGATTTTGGATTGGC 1469
Query 1371 TAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGGGAACTTTTGGATA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGGGAACTTTTGGATA 1529
Query 1431 CTTAGCTCCAGAGTATGCATCAAGTGGAAAGTTATCCGACAAATCTGATGTTTTCTCATT 1490
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1530 CTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTGATGTTTTCTCATT 1589
Query 1491 TGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCCTCTGGATCTAACTGGAGAAAT 1550
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1590 TGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATCTAACTGGAGAAAT 1649
Query 1551 GGAAGACAGCTTGGTAGACTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGA 1610
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GGAAGATAGCTTGGTAGATTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGA 1709
Query 1611 TTACAGCCAATTGGCAGATCCGCGTCTAGAGCTAAACTACAATCATCAAGAGATGGTTCA 1670
||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1710 TTACAACCAATTGGCTGATCCACGTCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCA 1769
Query 1671 AATGGCTTCTTGTGCAGCTGCAGCAATCAGACACTCAGCAAGAAGACGACCTAAGATGAG 1730
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1770 AATGGCTTCTTGTGCAGCTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAG 1829
Query 1731 CCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGAAGGAACAAG 1790
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1830 CCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAG 1889
Query 1791 ACCAGGACAAAGCACGTATTTGAGCCCCGGAAGTGTGAGCTCGGAGTATGATGCAAGCTC 1850
|||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1890 ACCAGGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTC 1949
Query 1851 TTACA-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAATATCAAA 1909
|||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1950 GTACACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAA 2008
Query 1910 GCAGTGAATATGGTGGAACAAGTGAGTATGGCTTAAATCCTTCTGCTTCAAGTAGTGAAG 1969
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2009 GCAGTGAATATGGTGGAACAAGTGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAG 2068
Query 1970 AAATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2010
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 AAATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99597881280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5