BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888697
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33870.1 | Symbols: | Peroxidase superfamily protein | chr4... 1201 0.0
AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 67.6 2e-10
> AT4G33870.1 | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492
REVERSE LENGTH=1206
Length=1206
Score = 1201 bits (650), Expect = 0.0
Identities = 807/881 (92%), Gaps = 18/881 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTTTCTCGGAGACTACAAGATCGCTTTACTTACTTGCTCCGTTATCGCTCTCAGC 60
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTCCTCGGAGACTACAAGTTCGCTTTACTTACTTGCTCCGTTATCGCTCTCAGC 60
Query 61 ATCTACTTTGCGATTAAAGGCGTCGAATTTCGTTTCGCGAACGATTCACCGGGAAATCGT 120
|||||||| |||||| || ||||||||||||||||||| ||||||||||||||| ||||
Sbjct 61 ATCTACTTCGCGATT-AA--CGTCGAATTTCGTTTCGCGTACGATTCACCGGGAACTCGT 117
Query 121 AACGGAGGTAAGGTTTCCGAGAAATCTCTCTTCGAAGATGAATTCATGTACATGTCAATC 180
| ||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 118 ACCGGAGTTAAGGTTTCCGAGAAATCTCCCTTCGACGACGAATTCATGTACATGTCAATC 177
Query 181 GCTGAAGATATCGATCGATCTCACCTCCACTACGATTACTACCGTGAATCTTGCCCTACC 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTGAAGATATCGATCGATCTTACCTCCACTACGATTACTACCGTGAATCTTGCCCTACC 237
Query 241 GCCGAGAAAATCATCGCGAAAGCTAGCAGAGATATCTACAATGTCACACCCAGCGTGGCT 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 238 GCCGAGAAAATCATCGCGAAAGCTATCAGAGATATCTACAATGTCACACCCAGCGTAGCT 297
Query 301 CCGTCTCTTATCCGTCTCCTCTTTCACGATTGCTTCATCGAGGGATGTGATGCATCGGTC 360
||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 CCGCCTATTATCCGTCTCCTCTTTCACGATTGCTTCATCGAGGGATGTGATGCATCAGTC 357
Query 361 CTTCTAGACGCAGATGAAGCACATACTTCTGAGAAAGATGCATCTCCAAACCTATCCTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTCTAGACGCAGATGAAGCACATACTTCTGAGAAAGATGCATCTCCAAACCTATCCTTG 417
Query 421 AAAGGCTTTGATGTGATTGACGCCATTAAGTCTGAGCTAGAGAATGTCTGTCCCGGAGTT 480
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 AAAGGGTTTGATGTGATTGACGCCGTTAAGTCTGAGCTAGAGAATGTCTGTCCCGGAGTT 477
Query 481 GTGTCCTGCGCCGACCTTCTTGTATTGGCAGCTAGAGAAGCAGTCCTAGTGGCTGG-TGG 539
|| ||||| || ||||| ||||||||||||||||||||||| |||||||| | | |
Sbjct 478 GTTTCCTGTGCTGACCTACTTGTATTGGCAGCTAGAGAAGCCGTCCTAGTTG-TAAATT- 535
Query 540 TCCATTTTATC-CTCTAGAAACTGGAAGGAAGGATAGTGCAGCAGCCTTCAGGGAGATTG 598
||| | | || |||| |||| | ||||||||||| |||||| |||
Sbjct 536 TCCCCTCTCTCACTCTCTCTTCTGGTT-------T--TGCAGCAGCCTACAGGGATTTTG 586
Query 599 CAGAACAAC-AGCTTCCTGCACCAGACGCTACTCTCTCGGAGATTCTTGAAAGGTTTTCT 657
||||||| | ||||||||||||||||||||||||| |||| ||||||| || | ||||||
Sbjct 587 CAGAACA-CGAGCTTCCTGCACCAGACGCTACTCTGTCGGTGATTCTTCAACGTTTTTCT 645
Query 658 GTCAGAGGATTCAACGAGAGAGAAACCGTCAGCTTATTCGGAGCACACAGCATAGGCATC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 646 TTCAGAGGATTCAACGAGAGAGAAACCGTCAGCTTATTCGGAGCACACAGCATTGGCATC 705
Query 718 ACGCATTGCACATTTTTTAAGAATCGCCTCTACAACTTCTCAGCAACCGGGAAGCCTGAC 777
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 706 ACGCATTGCACATTTTTTAAGAACCGCCTCTACAACTTCTCAGCAACCGGGAAGCCTGAT 765
Query 778 CCTGAACTCAATCCAGGGTTCCTCCAAGAACTGAAAACCAAATGCCCCTTCTCTGTCTCG 837
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 766 CCTGAACTCAATCCAGGGTTCCTCCAAGAACTGAAAACGAAATGCCCCTTCTCTGTCTCG 825
Query 838 GCTTCATCTCCATCTGCTTCCCCTGGCACTGGTTTACTACC 878
||||||||||||||||| |||||| || |||||||| |||
Sbjct 826 ACTTCATCTCCATCTGCTCCCCCTGACATTGGTTTACCACC 866
Score = 326 bits (176), Expect = 4e-88
Identities = 208/223 (93%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 872 TACTACC-AAGACTGATGCAGAAGAAAGGGTTGCTGTTTTCTGACCAGCAACTAATGGGT 930
|||| || |||||| |||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 985 TACTTCCGAAGACTAATGCAGAATAAAGGGTTGATGTCTTCTGACCAGCAACTAATGGGT 1044
Query 931 AGTGAGGTGACTGAGATGTGGGTGAGGGCATATGCTTCTGATCC-TCTGTTGTTCCGCAG 989
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1045 AGTGAAGTGACTGAGATGTGGGTGAGGGCATATGCTTCTGATCCGT-TGTTGTTCCGCAG 1103
Query 990 AGAATTTGCTATGTCTATGATGAAACTGTCAAGCAATCATGTCTTGACTGGTCCACTAGG 1049
||||||||||||||| ||||||||||| |||||| || |||||||||||||||| |||||
Sbjct 1104 AGAATTTGCTATGTCAATGATGAAACTTTCAAGCTATAATGTCTTGACTGGTCCTCTAGG 1163
Query 1050 ACAAGTGAGAACAAGCTGCTCAAAGGCCCTCCCGAGGAACTGA 1092
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1164 ACAAGTGAGAACAAGCTGCTCAAAGGCCCTCCCCAGGAACTGA 1206
> AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:6474802-6475904
FORWARD LENGTH=850
Length=850
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 452 CTGAGCTAGAGAATGTCTGTCCCGGAGTTGTGTCCT 487
||||||||||||||||||||||||||||||||||||
Sbjct 341 CTGAGCTAGAGAATGTCTGTCCCGGAGTTGTGTCCT 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5