BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888706
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33790.1 | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reducta... 2266 0.0
> AT4G33790.1 | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related
male sterility protein | chr4:16204157-16207947
REVERSE LENGTH=1706
Length=1706
Score = 2266 bits (1227), Expect = 0.0
Identities = 1402/1487 (94%), Gaps = 10/1487 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACAGAAACGGAGGTCGTAAGTGTTCTTAAGTACCTTGACAACAAGTCCATATTG 60
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 57 ATGTCGACAGAAATGGAGGTCGTTAGTGTTCTTAAGTACCTTGACAACAAATCCATATTG 116
Query 61 GTCATTGGAGCTGCTGGGTTCTTAGCAAATATTTTTGTGGAGAAGATATTAAGGGTGGCA 120
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 117 GTCGTTGGAGCTGCTGGGTTCTTAGCAAATATCTTTGTGGAGAAGATATTAAGGGTGGCA 176
Query 121 CCAGACGTGAAGAAACTGTATCTCCTTCTACGAGCATCAAATGGAAAATCTGCTACCCAG 180
||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 177 CCAAACGTGAAGAAACTCTATCTCCTTCTAAGAGCATCAAAAGGAAAATCTGCTACCCAG 236
Query 181 AGGTTTAACGACGAGATTTTGAGGAAAGATTTGTTCAAGGTGGTGAAGGAGAAGTATGGT 240
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 237 AGGTTTAACGACGAGATTTTGAAGAAAGATTTGTTCAAGGTGCTGAAGGAGAAGTATGGT 296
Query 241 CCCAATCTAAATCAACTTATATCTGAGAAAGTCACTATTATCGATGGAGACATTTGCCTT 300
||||||||||||||||||| ||| |||||| |||||||| |||| |||||||||||||||
Sbjct 297 CCCAATCTAAATCAACTTACATCAGAGAAAATCACTATTGTCGACGGAGACATTTGCCTT 356
Query 301 GAGGATTTAGGTCTTCACGACTTCGACTTGGCTCATGAGATGATTCACCAAGTTGATGCC 360
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 GAGGATTTAGGTCTTCAAGACTTCGACTTGGCTCATGAGATGATCCACCAAGTTGATGCC 416
Query 361 ATTGTTAATTTAGCTGCAACTACGAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 ATTGTTAATTTAGCTGCAACTACTAAGTTTGATGAAAGATACGATGTAGCTCTTGGGATC 476
Query 421 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AACACATTGGGTGCTCTCAATGTCTTGAACTTTGCCAAGAGATGTGCAAAGGTTAAGATC 536
Query 481 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTTGTTCATGTATCAACAGCTTACGTGTGCGGAGAAAAATCTGGCTTGATAATGGAAACA 596
Query 541 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTCTAGATATCAA-TCATGAGAA 599
||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||
Sbjct 597 CCGTACCGTATGGGTGAGACGTTGAATGGAACCACCGGTTTAGACATCAACT-ACGAGAA 655
Query 600 GAAATTCGTTCAGGAGAAACTTGACCAGCTCCGAGCCAGT-GGAGCCTCTCCTGAAACCG 658
||||| |||||||||||||||||||||||||||| | | |||||| |||||||||||
Sbjct 656 AAAATTGGTTCAGGAGAAACTTGACCAGCTCCGAGTAA-TCGGAGCCGCTCCTGAAACCA 714
Query 659 TCACACAAGCCATGAAGGATCTCGGACTCAGGA-GGGCAAAGGTGTACGGATGGCCAAAC 717
|||| || |||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 715 TCACGGAAACCATGAAGGATCTCGGACTCAG-ACGGGCAAAGATGTACGGATGGCCAAAC 773
Query 718 ACATATGTGTTCACCAAGGCAATGGGGGAGATGATGGTTGGGACAAAAAGGGAAAATCTA 777
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 774 ACATATGTGTTCACCAAAGCAATGGGGGAGATGATGGTAGGGACAAAAAGAGAAAATCTG 833
Query 778 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTCCCTGGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 TCACTTGTGTTGCTTCGTCCTTCAATTATTACCAGCACATTCAAAGAACCATTTCCTGGT 893
Query 838 TGGACTGAGGGCATCAGGACCATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGGACTGAGGGCATCAGGACTATTGATAGTTTAGCTGTTGGATATGGCAAAGGCAAACTC 953
Query 898 ACGTGCTTTCTTTGTGATCTTAATGCTATTTCCGATGTGCTGCCTGCGGATATGGTAGTA 957
|||||||| || ||||||||| ||||| |||| |||||| |||| || ||||||||||||
Sbjct 954 ACGTGCTTCCTCTGTGATCTTGATGCTGTTTCTGATGTGATGCCGGCAGATATGGTAGTA 1013
Query 958 AATTCGATTCTAGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1017
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AATTCGATTCTTGTATCAATGGCCGCTCAAGCCGGTAAACAAGAAGAGATTATTTACCAT 1073
Query 1018 GTGGGTTCTTCACTTAGGAATCCGATGAAAAATGAAAAATTTCCTGAATTAGCGTATCGG 1077
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1074 GTGGGTTCTTCACTTAGAAATCCGATGAAAAATTCAAAGTTTCCTGAATTAGCGTATCGG 1133
Query 1078 TATTTCACAACCAACCCGTGGATCAACAAAGAAGGCAAGGTCGTTCGGGTCGGGAACATT 1137
|||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||| ||||
Sbjct 1134 TATTTCTCAATCAAACCGTGGACCAACAAAGAAGGGAAGGTCGTTAAGGTCGGGGCCATT 1193
Query 1138 GAGATTCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGTTACTTGATTTCA 1197
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1194 GAGATCCTGAGTTCTATGCGTAGTTTCCATAGATACATGACCATACGCTACTTGATTGCA 1253
Query 1198 TTGAAGGGACTTGAATTGGTAAACATGGTACTTTGCAAGTTGTTGGAGAAGGAATTTAAG 1257
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 1254 TTGAAGGGACTTGAATTGGTAAACATAATACTTTGCAAGTTGTTTGAGAAGGAATTTCAG 1313
Query 1258 TACTTCCATA-GAAAAATAAATTTTATATACCGGCTTGTTGATCTCTATCAGCCTTACCT 1316
|| ||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1314 TATTTCAATAAGAAAA-TAAATTTTATATTCCGGCTTGTTGATCTCTATCAGCCTTACCT 1372
Query 1317 CTTTTTCTATGGAATATTTGATGATACAAACACAGAAAAATTGC-AAAATATGGTATCGA 1375
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct 1373 CTTTTTCTATGGAATATTTGATGATTCAAACACAGAAAAATTGCGAAAA-ATGGTATCGA 1431
Query 1376 AGACGGGAGTCGAAAGCGAGATGTTCTATTTCGATCCAAAGGTTATCGATTGGGACGACT 1435
||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1432 AGACGGGAGTCGAAAACGAGATGTTTTATTTCGATCCAAAGGTTCTCGATTGGGACGACT 1491
Query 1436 ATTTTTTGAATACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1482
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1492 ATTTTTTGAACACACATGTTATTGGGCTGCTTAAGTATGTCTTCTAA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5