BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888715
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits... 374 5e-103
> AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469664-10471390
FORWARD LENGTH=1193
Length=1193
Score = 374 bits (202), Expect = 5e-103
Identities = 293/333 (88%), Gaps = 22/333 (7%)
Strand=Plus/Plus
Query 100 CCAAAGATAAAGCTTTATCGGAATAGCTTTTTCGGTTGCCAAGCAAATGATCTTTCTTTC 159
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 692 CCAAAGATAAAGCTTTATCGGGATAGCTTTTTCGGTTGCCAAGCAGATGATCTTTCTTTC 751
Query 160 ACAGACATTGTTAAGC---A----A---T-A-CTCT-AA----T----TCATGGCTTAAT 198
|| ||||||| ||||| | | | | |||| || | ||||||||||||
Sbjct 752 ACTGACATTGCTAAGCAATACTCTATTGTAATCTCTAAACTTTTACAGTCATGGCTTAAT 811
Query 199 GGAGAAGCAACACCAAAGTACTGGAAAGATGATGTGATCGCTGGCATTGTCTCTGGCTTC 258
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 812 GGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCATTGTCTCTGGCTTC 871
Query 259 GCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGTAAAATCTTGGTTC 318
||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||
Sbjct 872 GCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGCAAAATCTTGGTTC 931
Query 319 CCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCTCTTGGTACAAGTG 378
|||| ||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||
Sbjct 932 CCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATATATTGGTACAAGTG 991
Query 379 AAGCGGTGCATGCTTGCTTCTTGTTTATTTCTC 411
|| || |||||| |||||||||||||| |||||
Sbjct 992 AAACG-TGCATGTTTGCTTCTTGTTTACTTCTC 1023
Score = 156 bits (84), Expect = 2e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1 GTTGATCTTATGTCTTCTAAAGTATGTGGCATTGGACTATTGAACATCAAAGCACAACAT 60
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 398 GTTGATCTTAGGTCTTCTAAAGTGTGTGGCATTGGACTATTGAACGTCAAAGCACAACAT 457
Query 61 TTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 96
|||||||||||||||||||||||||||||||||||
Sbjct 458 GTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5