BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888715 Length=462 Score E Sequences producing significant alignments: (Bits) Value AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits... 374 5e-103 > AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469664-10471390 FORWARD LENGTH=1193 Length=1193 Score = 374 bits (202), Expect = 5e-103 Identities = 293/333 (88%), Gaps = 22/333 (7%) Strand=Plus/Plus Query 100 CCAAAGATAAAGCTTTATCGGAATAGCTTTTTCGGTTGCCAAGCAAATGATCTTTCTTTC 159 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 692 CCAAAGATAAAGCTTTATCGGGATAGCTTTTTCGGTTGCCAAGCAGATGATCTTTCTTTC 751 Query 160 ACAGACATTGTTAAGC---A----A---T-A-CTCT-AA----T----TCATGGCTTAAT 198 || ||||||| ||||| | | | | |||| || | |||||||||||| Sbjct 752 ACTGACATTGCTAAGCAATACTCTATTGTAATCTCTAAACTTTTACAGTCATGGCTTAAT 811 Query 199 GGAGAAGCAACACCAAAGTACTGGAAAGATGATGTGATCGCTGGCATTGTCTCTGGCTTC 258 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 812 GGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCATTGTCTCTGGCTTC 871 Query 259 GCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGTAAAATCTTGGTTC 318 ||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||| Sbjct 872 GCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGCAAAATCTTGGTTC 931 Query 319 CCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCTCTTGGTACAAGTG 378 |||| ||||||||||||||| ||||| |||||||||||||||||| | |||||||||||| Sbjct 932 CCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATATATTGGTACAAGTG 991 Query 379 AAGCGGTGCATGCTTGCTTCTTGTTTATTTCTC 411 || || |||||| |||||||||||||| ||||| Sbjct 992 AAACG-TGCATGTTTGCTTCTTGTTTACTTCTC 1023 Score = 156 bits (84), Expect = 2e-37 Identities = 92/96 (96%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1 GTTGATCTTATGTCTTCTAAAGTATGTGGCATTGGACTATTGAACATCAAAGCACAACAT 60 |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 398 GTTGATCTTAGGTCTTCTAAAGTGTGTGGCATTGGACTATTGAACGTCAAAGCACAACAT 457 Query 61 TTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 96 ||||||||||||||||||||||||||||||||||| Sbjct 458 GTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 493 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22017274062 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5