BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888757
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33360.1 | Symbols: FLDH | NAD(P)-binding Rossmann-fold supe... 1604 0.0
> AT4G33360.1 | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:16067672-16069374 REVERSE LENGTH=1352
Length=1352
Score = 1604 bits (868), Expect = 0.0
Identities = 981/1036 (95%), Gaps = 5/1036 (0%)
Strand=Plus/Plus
Query 1 ATGGGCCCAAAGATGCCCAACATA-AAA-A-CAAATATGAAAATATTAGTCACCGGCTCT 57
|||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGGCCCAAAGATGCCCAACACAGAAACAGAAAATATGAAAATATTAGTCACCGGCTCT 60
Query 58 ACTGGTTACTTAGGCGCACGACTGTGCCACGCTCTCCTCCGTCGCGGCCACTCTGTACGC 117
||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||
Sbjct 61 ACTGGTTACTTAGGCGCACGACTCTGCCACGTTCTCCTCCGTCGTGGCCACTCCGTACGT 120
Query 118 GCCTTGGTCCGCCGCACCAGCGATATCTCTGACTTACCTCCAGAAGTCGAGCTCGCTTAT 177
|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 121 GCATTGGTCCGCCGCACCAGCGATCTCTCTGACTTACCTCCAGAAGTTGAGCTCGCCTAT 180
Query 178 GGAGACGTAACAGACTACCGTTCTCTAACGGATGCTTGCTCCGGTTGCGATATCGTTTTC 237
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGACGTAACGGATTACCGTTCTCTAACGGATGCTTGCTCCGGTTGCGATATCGTTTTC 240
Query 238 CACGCCGCGGCTTTAGTTGAGCCTTGGCTTCCTGATCCATCTCGATTTGTCTCAGTCAAC 297
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 241 CACGCCGCAGCTTTAGTTGAGCCTTGGCTTCCTGACCCATCTCGATTCATCTCAGTCAAC 300
Query 298 GTTGGTGGACTCAAGAACGTTTTGGAAGCTGTTAAGGAGACGAAAACAGTGCAGAAGATT 357
||||||||||| ||||| || ||||||||||| ||||||||||| || ||||||||||||
Sbjct 301 GTTGGTGGACTGAAGAATGTCTTGGAAGCTGTAAAGGAGACGAAGACCGTGCAGAAGATT 360
Query 358 ATCTACACTTCTTCATTCTTCGCCCTTGGGTCTACCGATGGATCTGTTGCTAATGAGGAT 417
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 361 ATCTACACTTCTTCCTTCTTCGCTCTTGGATCTACCGATGGATCTGTTGCTAATGAGAAT 420
Query 418 CAAGTTCATAGTGAGAGGTTCTTCTGCACTGAGTATGAGAGATCCAAGGCTGCTGCTGAT 477
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CAAGTTCATAATGAGAGGTTCTTCTGCACTGAGTATGAGAGATCCAAGGCTGTTGCTGAT 480
Query 478 AAGATTGCTTTGAATGCTGCATCTGAAGGTGTGCCGATAATTTTGCTGTATCCTGGTGTT 537
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGATGGCTTTGAATGCTGCTTCTGAAGGTGTGCCGATAATTTTGCTGTATCCTGGTGTT 540
Query 538 ATTTATGGTCCAGGCAAGCTCACTACAGGCAATATGGTTGCTA-AATTGTTAATCGAGCG 596
|||| ||||||||||||||||||| ||| |||||||||||||| || |||| ||||||||
Sbjct 541 ATTTTTGGTCCAGGCAAGCTCACTTCAGCCAATATGGTTGCTAGAA-TGTTGATCGAGCG 599
Query 597 CTTTAACGGGAGATTACCTGGATATATTGGCTCTGGGAATGATAGATACTCCTTCAGCCA 656
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CTTTAACGGGAGGTTGCCTGGATATATTGGCTCTGGGACGGATAGATACTCCTTCAGCCA 659
Query 657 TGTTGATGATGTAGTGGAGGGTCATGTTGCTGCAATGGAAAAAGGTAGGCTTGGTGAAAG 716
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTTGATGATGTTGTGGAGGGTCATGTTGCTGCAATGGAAAAAGGTAGGCTTGGTGAAAG 719
Query 717 ATACTTACTCACTGGGGAAAATGCTTCTTTCAAGCTTGTCTTTGACATGGCTGCACTGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATACTTACTCACTGGGGAAAATGCTTCTTTCAAGCTTGTCTTTGACATGGCTGCACTGAT 779
Query 777 TACCGGAACCAAAAAACCAAACTTTAGCATTCCATTATGGGCAATCAACGCATACGGATG 836
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TACTGGAACCAAAAAGCCAAACTTTAGCATTCCATTATGGGCCATCAACGCATACGGATG 839
Query 837 GTTATCTGTTCTAATCTCTCGGGTTACAGGAAAGCTTCCACTTATCAGTCCCCCGACAGT 896
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 GTTATCTGTTTTAATCTCTCGGGTTACAGGAAAGCTTCCACTTATCAGTCCTCCGACAGT 899
Query 897 GAAAGTGCTGAGACATCAGTGGGCATACTCTTGTGACAAGGCTAAGCTGGAACTTGGTTA 956
|| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 900 GACAGTGCTGAGACATCAGTGGTCATACTCTTGTGATAAGGCTAAGCTGGAACTTGGTTA 959
Query 957 TAACCCTCGAAGCCTAAAGGAAGGATTGGAGGAGATGCTCCCTTGGTTGAAGAGTTTGGG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 TAACCCTCGAAGCCTAAAGGAAGGATTGGAGGAGATGCTCCCTTGGTTGAAGAGTCTGGG 1019
Query 1017 CGTCATTCAATACTGA 1032
||||||||| ||||||
Sbjct 1020 CGTCATTCACTACTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5