BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888758

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33355.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   593    3e-169


> AT4G33355.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:16067048-16067820 
FORWARD LENGTH=661
Length=661

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 348/361 (96%), Gaps = 2/361 (1%)
 Strand=Plus/Plus

Query  1    ATGAGGAACATTACTACTACAACCCGAACAATGTTACTGCTTGTGATTACAATTTTGA-T  59
            |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | |
Sbjct  50   ATGAGGAACATTACTACTACAACCCGAAAAATGTTACTACTTGTGATTACGATTTT-ATT  108

Query  60   GGGGATTGCGTATCATGGAGAAGCCATAGCATGTCCGCAGGTAAACATGTACTTAGCACA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  109  GGGGATTGCGTATCATGGAGAAGCCATAGCATGTCCGCAGGTAAACATGTACTTAGCACA  168

Query  120  ATGTTTGCCTTATCTAAAAGCTGGAGGAAATCCGTCTCCGATGTGTTGCAACGGACTTAA  179
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  169  ATGTTTGCCTTATCTAAAAGCTGGAGGAAATCCGTCTCCAATGTGCTGCAACGGACTTAA  228

Query  180  TAGTCTAAAAGCCGCTGCGCCTGCGAAATCCGATAGACAAGTAGCTTGCAATTGTTTGAA  239
            ||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct  229  TAGTCTAAAAGCCGCAGCGCCTGAGAAAGCCGATAGACAAGTAGCTTGTAATTGCTTGAA  288

Query  240  GAGTGTAGCTAATACAATCCCTGGAATTAATGATGATTATGCCAAACAACTCCCTGCTAA  299
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  289  GAGTGTAGCTAATACAATCCCTGGAATTAATGATGATTTTGCCAAACAACTCCCTGCTAA  348

Query  300  ATGTGGTGTTAATATAGGAGTCCCTTTCTCTAAGACTGTGGACTGTAACAGCATAAACTG  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  349  ATGTGGTGTTAATATAGGAGTCCCTTTCTCTAAGACTGTGGACTGTAACAGCATAAACTG  408

Query  360  A  360
            |
Sbjct  409  A  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5