BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888763
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33280.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1554 0.0
> AT4G33280.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:16047354-16049355 REVERSE LENGTH=1062
Length=1062
Score = 1554 bits (841), Expect = 0.0
Identities = 955/1011 (94%), Gaps = 3/1011 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGTTGCGAGGATTGCATGAAATGGGAAGAAGAACTCTACTGGACTCATTTT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGGAAGAGAATTGCGAGGATTGCATGAAATGGGAAGAAGAACTCTACTGGACTCATTTT 105
Query 61 CAAACCCTCCATTTCACTCAGCTCCTCCTTCCTGGTTTCCACTATCGCCTTGCCATACCT 120
||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 106 CAAACTCTCCATTTCACTCAGCTCCTCCTTCCTGGTTTCCACAATCGCCTCGTCATACCT 165
Query 121 CAAAAGTTTTCAACACATTGCAAAAGGAAGCTACCTCAGATTGTCACCCTCAAAAGTCCA 180
| ||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 166 CGAAAGTTTTCAACACACTGCAAAAGGAAGCTGCCTCAGATTGTGACTCTCAAAAGTCCA 225
Query 181 AGTGGCGCTACATACAGTGTGAGAGTAGATGAAGATGATGAAAAGACACTGGCTTTTGGT 240
||||||| |||||| | |||| ||||||| |||||||||||||||||| |||||||| ||
Sbjct 226 AGTGGCGTTACATATAATGTGGGAGTAGAGGAAGATGATGAAAAGACAATGGCTTTTCGT 285
Query 241 TGTGGGTGGGACAAGTTTGTGAAAGATCATTCGCTAGAGGAGAATGATCTATTGGTCTTC 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TTTGGGTGGGACAAGTTTGTGAAAGATCATTCGCTAGAGGAGAATGATCTATTGGTCTTC 345
Query 301 AAGTTCCATGGACTGTCTGAGTTTGAAGTGCTGGTTTTCGATGGACAGACTTTATGTGAG 360
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 346 AAGTTCCATGGAGTGTCTGAGTTTGAAGTGCTTGTTTTCGATGGACAGACTTTATGTGAG 405
Query 361 AAACCCACTTCTTATTTCGTCAGGAAATGTGGTCATGCAGAGAAGACCAAAGTATCTCAG 420
||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 406 AAACCTACTTCTTATTTCGTCAGGAAATGTGGGCATGCAGAGAAGACTAAAGCATCTCAC 465
Query 421 ACCGGTTATGAGCAAGAAGAACATATTAACCCTGACATTGATACAGCATCTGCCCAGCTT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 466 ACCGGTTATGAGCAAGAAGAACATATTAACTCTGACATTGATACAGCATCTGCCCAGCTT 525
Query 481 CCTGTTATATCTCCAACTAGTACAGTACGAGTCAGTGAAAGGAAGTATCATCCCCTTAGC 540
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 526 CCTGTTATATCTCCAACTAGTACAGTACGAGTCAGTGAAGGGAAGTATC--CCC-TTAGC 582
Query 541 AGTTTTAAGAAGATGCGAGGAGAAATAAGTAATGACAATCTCGATCAAAAAACTGACGTA 600
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 583 GGTTTTAAGAAGATGCGAAGAGAATTAAGTAATGACAATCTCGATCAAAAAGCTGACGTG 642
Query 601 GAGATGATTTCAGCTGGAAGCAATAACAGAGCCTTATCTCTGGCCAAGAGAGCTATTTCC 660
|||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 643 GAGATGATTTCAGCTGGAAGCAATAAGAAAGCCTTATCTCTGGCCAAGAGAGCCATTTCG 702
Query 661 CCGGATGGTTTCTTGGTGTTCATGAGACGCTCTCATGTTCTATCGAAGTGTTTTCTGACA 720
||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 703 CCGGATGGTTTCTTGGTGTTCATGAAACGCTCTCATGTGGTATCAAAGTGTTTTCTGACA 762
Query 721 ATCCCATACAAATGGTGCGTGAAGAACATGCTTATGGCACGTCAAGAAGTGGTGATGCAG 780
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 763 ATCCCATACAAATGGTGCGTGAAGAACATGCTTATCACACGTCAAGAAGTGGTGATGCAG 822
Query 781 GTGGATCAAAGGAAATGGGACATGAAGTTTAACTTTTTCGGAGCTCGTGGTAGTGGTGGG 840
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 823 GTGGATCAAACGAAATGGGAGATGAAGTTTAACATTTTCGGAGCTCGTGGTAGTGGTGGG 882
Query 841 ATTTCAACAGGGTGGAAGAAGTTTGTACAAGACAACAACTTGCGCGAAGGTGATGTATGT 900
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 883 ATTTCAACCGGGTGGAAGAAATTTGTACAAGACAACAACTTGCGCGAAGGTGATGTCTGT 942
Query 901 GTGTTTGAGCCAGCGAATTCTGTAACAAAACCGCTTCATCTCAATGTCTATATATTCCGT 960
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 943 GTGTTTGAGCCAGCCAATTCTGAAACAAAACCGCTTCATCTCAATGTCTATATATTCCGT 1002
Query 961 GGTGAAGAAACGGAAAGAAGCAACAATGTTGACTCGGTTCACACAATAAGT 1011
||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 1003 GGTGAAGAAACGGAAAGAACCAACAATGTTGACCCGGTTTACACAATAAGT 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5