BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888778
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33140.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1528 0.0
> AT4G33140.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:15981405-15984351 FORWARD
LENGTH=1521
Length=1521
Score = 1528 bits (827), Expect = 0.0
Identities = 1001/1078 (93%), Gaps = 39/1078 (4%)
Strand=Plus/Plus
Query 1 ATGTTAAAGAGGCACTCTAACGCCATTCTCTTCAGAATCGCCAGCTTCTTCGATTCACAT 60
||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |
Sbjct 244 ATGTTAAAGAGGCACTCTATCGCCATTCTCTCCAGAATCGCAAG---CTTCGATTC-C-- 297
Query 61 CATAAAACCCTTTTTATGTCTTCCTTTACCGATCCCCTTTTTCTGCGATCGCTTCACACT 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 298 CATAAAACCC---TTATGTCTTCCTTTACCGATCCCCTTTTTCTGCGATCGCTTTACTCT 354
Query 121 CCTCGATCCATCGCCAACACATTTCATGGAGATGGAGATTTCGTTCATAGACTC-AC--T 177
|||||||||||||||| || ||||||||||||| ||| | |||||||||| || |
Sbjct 355 CCTCGATCCATCGCCATCAGATTTCATGGAGAT-----TTT-GCTCATAGACTCTACAAT 408
Query 178 CCCATTCAAATTTACCTCAACCACAACAACAAGAGT--CGCTT-TAATGGTTTGTTCAAG 234
||||||||||||||| |||| |||||||||| ||| | ||| ||||||||||||||||
Sbjct 409 CCCATTCAAATTTACAACAACAACAACAACAACAGTGGCTCTTGTAATGGTTTGTTCAAG 468
Query 235 GTTAAAGGTGGAGGAGTTAAGCCCAATGGATTCACCTTGACAAGTTGTTGTTTTGATTCT 294
|||||||||||||||| ||||| || |||||||||||| | | ||||||||||||||
Sbjct 469 GTTAAAGGTGGAGGAGGAAAGCCGAAAGGATTCACCTTG-C--GAAGTTGTTTTGATTCT 525
Query 295 CACAAGAACCCTGATCAAAAGGCTCGAGCTTTAACTCAACATCGCCGCCTTCTCCATGAT 354
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 526 CATAAGAAACCTGATCAAAAGGCTCGAGCTTTAACTCAACATCGCCGCTTTCTCCATGAT 585
Query 355 CTCGGATCTGGGCC---T-----A------G-TGCCGGAACCACCGACCTTGCAGATGGC 399
|| ||||||||||| | | | ||||||||| ||||||||||| ||||||
Sbjct 586 CTGGGATCTGGGCCTAGTGAAGAACGCGCCGCTGCCGGAACTACCGACCTTGCCGATGGC 645
Query 400 CGTGGTGCATATCTGCGTACCAGGTTTCGAGGAAATGATAAGATTGTTGTGGCTGTTGAC 459
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 646 CGTGGTGCATATCTGCGTACGAGGTTTCAAGGAAATGATAAGATTGTTGTGGCTGTTGAC 705
Query 460 ATTGATGAGGTTCTTGGAAACTTTGTCTCGGCCCTTAACAGATTCATTGCGGACCGCTAT 519
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATAGATGAGGTTCTTGGAAACTTTGTCTCGGCCCTTAACAGATTCATTGCGGACCGCTAT 765
Query 520 TTGTCTAACCATTCAGTCTCAGAATACCATGTCTATGAGTTCTTCAAGATATGGAACTGC 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TTGTCGAACCATTCAGTCTCAGAATACCATGTCTATGAGTTCTTCAAGATATGGAACTGC 825
Query 580 TCTCGCAACGAAGCCGACTTACGTGTTCATGAATTCTTTAAGACATCATATTTCAAGAAA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCTCGCAACGAAGCCGACTTACGTGTTCATGAATTCTTTAAGACATCATATTTCAAGAAA 885
Query 640 GGGATCCATCCTCTTCCAGGTGCCCATAAGACTCTTCACAAGCTATCAAAATATTGCGAC 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGGATCCATCCTCTTCCAGGTGCCCATAAGACTCTTCACAAGCTATCAAAATATTGCGAC 945
Query 700 ATGTCAGTTGTGACGTCCCGGCAGAATGCGATAAAGGAGCACACACTTGAGTGGATCGAG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATGTCAGTTGTGACGTCCCGGCAGAATGCGATAAAGGAGCACACACTTGAGTGGATCGAG 1005
Query 760 ATACATTTCCCAGGACTATTTAAACAAATTCATTTTGGAAACCATTTTGCTCTTCATGGA 819
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1006 ATACATTTCCCGGGACTATTTAAACAGATTCATTTTGGGAACCATTTTGCTCTTCATGGA 1065
Query 820 GAGTCTAGACCAAAGTCTGAAATCTGCAGATCATTTGGAGCAGAGATATTGATTGACGAT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GAGTCTAGACCAAAGTCTGAAATCTGCAGATCATTTGGAGCAGAGATATTGATTGACGAT 1125
Query 880 AACCCGAGATATGCCGAGGAATGCGCTAACATCGGAATGAAGGTTCTTCTCTTTGACTAT 939
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1126 AACCCAAGATATGCCGAGGAATGCGCTAACATTGGAATGAAGGTTCTCCTCTTTGACTAT 1185
Query 940 GAAAATTCATACCCTTGGTCTAAGACAGAGTCTGTGGATAGGCATCCTTTGGTGACTAGA 999
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 GAAAATTCATACCCTTGGTCTAAGACAGAGTCTGTGGATCGGCATCCTTTGGTGACTAGA 1245
Query 1000 GTTCATAACTGGGAAGAGGTGGAGCAGCAGATTCTCTCATTGGCAGTGTCAAAATGTT 1057
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1246 GTTCATAATTGGGAAGAGGTGGAGCAGCAGATTCTCTCATTGGCAGTGTCAAAGTGTT 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5