BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888791 Length=816 Score E Sequences producing significant alignments: (Bits) Value AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXP... 189 4e-47 > AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419404-15424183 REVERSE LENGTH=2897 Length=2897 Score = 189 bits (102), Expect = 4e-47 Identities = 153/175 (87%), Gaps = 13/175 (7%) Strand=Plus/Plus Query 341 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTACTCAA--C-----G--ACCATCATT 391 |||||||||||||||||||||||||||||||||| ||||| | | ||||||||| Sbjct 684 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCATT 743 Query 392 CTGGGAAAGTGTTTTCATCTATGGAGAACATTATGACCCTTGTTGTAGAAGAAAGTGAGG 451 | ||||| || |||||||||||||||||||| |||||||||||| |||||||||| |||| Sbjct 744 CAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGAGG 803 Query 452 ATATAC-TTCCAGAGTTGCTTTCACCAATTCTACATTAC-GTTAAAAAGGATGAT 504 |||||| ||| |||| ||||||||||||| ||||||| | ||||||||||||||| Sbjct 804 ATATACCTTC-AGAGATGCTTTCACCAATCCTACATT-CTGTTAAAAAGGATGAT 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39735210277 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5