BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888791
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXP... 189 4e-47
> AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 14 growth
stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162
Blast hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink).
| chr4:15419404-15424183 REVERSE LENGTH=2897
Length=2897
Score = 189 bits (102), Expect = 4e-47
Identities = 153/175 (87%), Gaps = 13/175 (7%)
Strand=Plus/Plus
Query 341 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTACTCAA--C-----G--ACCATCATT 391
|||||||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 684 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCATT 743
Query 392 CTGGGAAAGTGTTTTCATCTATGGAGAACATTATGACCCTTGTTGTAGAAGAAAGTGAGG 451
| ||||| || |||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 744 CAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGAGG 803
Query 452 ATATAC-TTCCAGAGTTGCTTTCACCAATTCTACATTAC-GTTAAAAAGGATGAT 504
|||||| ||| |||| ||||||||||||| ||||||| | |||||||||||||||
Sbjct 804 ATATACCTTC-AGAGATGCTTTCACCAATCCTACATT-CTGTTAAAAAGGATGAT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5