BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888801
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1205 0.0
AT2G26060.1 | Symbols: emb1345 | Transducin/WD40 repeat-like su... 863 0.0
> AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:15920230-15922658 FORWARD LENGTH=987
Length=987
Score = 1205 bits (652), Expect = 0.0
Identities = 746/791 (94%), Gaps = 8/791 (1%)
Strand=Plus/Plus
Query 258 AAGTTTCGATGGCACTACTTGCGTTTGGGATAATTTTGCTACTGACTCCGAGTCTGTCTC 317
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 198 AAGTTTCGATGGCAATACTTGCGTTTGGGAAAATTTTGCTACTGACTCCGAGTCTGTCTC 257
Query 318 CGTTTTACAGGTACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTT 377
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGTTTTACGGGGACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTT 317
Query 378 GCTTGCAACATGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAGTACTACC-G-G-AG-A 433
||||||||| ||||||||||||||||||||||||||||||||| ||| ||| | | || |
Sbjct 318 GCTTGCAACTTGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAATACAACCAGAGGAGGA 377
Query 434 --ATGAATTTGATTGTGCTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGGTCCT 491
||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 378 CGATGAATTTGATACTATTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGGTCTT 437
Query 492 GTGGCATCCTACTATGGATGTTTTGTTCTCTTGAAGTTATGATAACACTGTCAAGATTTG 551
||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 438 GTGGCATCCCACCATGGATGTTTTGTTCTCTTGCAGTTATGATAACACTATCAAGATTTG 497
Query 552 GTGGTCTGAGGATGAAGATGGTGATTATAATTGTGTCCAAACCTTAGGTGAATCT-AACA 610
||| |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 498 GTGCTCTGAGGATGAAGATGGTGATTATAATTGTGTACAAACCTTAAGTGAA-CTTAACA 556
Query 611 ATGGTCATTCTTCCACCGTCTGGAGTATCTCCTTTAATGCTGCAGGGGACAAGATGGTCA 670
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 557 ATGGTCATTCTTCTACCGTCTGGAGTATCTCTTTTAATGCTGCAGGGGACAAGATGGTCA 616
Query 671 CTTGTAGTGATGATCTAACAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTG 730
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CTTGTAGTGATGATCTAGCAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTG 676
Query 731 GTGAAGGATATGTACCCTGGACCCATGTTTGTACACTCTCTGCTTTTCACGATCGTACCA 790
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 677 GTGAAGGATATGTACCCTGGACTCATGTTTGTACACTCTCTGGTTTTCACGATCGTACCA 736
Query 791 TATATTCAGTTCATTGGTCAAGGGACGGTGTTATTGCTAGCGGAGCAGGCGATGATACTA 850
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 737 TATATTCAGTTCATTGGTCAAGGGACGGTGTTATTGCTAGTGGAGCAGGCGATGATACTA 796
Query 851 TACAGTTATTTGTGGACAGCAACAGTGACTCTGTTGATAGACCTTCATACAAACTCTTGC 910
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 797 TACAGTTATTTGTGGACAGCGACAGTGACTCTGTTGATGGACCTTCATACAAACTTTTGG 856
Query 911 TTAAGAAAGAGAAAGCACATGAAAAGGATGTAAATTCAGTGCAATGGGCACCTGATAAGG 970
||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 857 TTAAGAAGGAGAAAGCACATGAAATGGATGTAAATTCGGTCCAATGGGCACCTGATAAGG 916
Query 971 AAAGCCGGTTGCTTGCCTCGGCCAGCGACGACAAAATGGTTAAGATTTGGAAGCTTGCCT 1030
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 917 AAAGCCGGTTGCTTGCCTCGGCCAGCGACGATAAAATGGTTAAGATTTGGAAACTTGCCT 976
Query 1031 GGGAGCCATGA 1041
||||||||||
Sbjct 977 CGGAGCCATGA 987
Score = 283 bits (153), Expect = 2e-75
Identities = 172/181 (95%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 1 ATGAAATTGATGGATAAGAATTTAGGGTTAGTA-GAGGTTCAGAAACTTGAAGGTCACAC 59
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGAAAGTGATGGATAAGAATTTAGGGTTAG-AGGAGGTTCAGAAACTTGAAGGTCACAC 59
Query 60 CGATCGTGTTTGGAACGTCGCCTGGAATCCCGCCGCCGACGGTGTTCTTGCCTCCTGCAG 119
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 60 TGATCGTGTTTGGAACGTCGCCTGGAATCCCGCCGCTGACGGTGTTATTGCTTCCTGCAG 119
Query 120 TGCCGATAAGACCGTACGAATCTGGGAGCAGAGCTCGCTTACTCGTTCCTGGACCTGCAA 179
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 120 TGCCGATAAGACCGTACGAATCTGGGAGCAGAGTTCTCTTACTCGTTCCTGGACCTGCAA 179
Query 180 G 180
|
Sbjct 180 G 180
> AT2G26060.1 | Symbols: emb1345 | Transducin/WD40 repeat-like
superfamily protein | chr2:11102301-11105355 FORWARD LENGTH=1386
Length=1386
Score = 863 bits (467), Expect = 0.0
Identities = 865/1053 (82%), Gaps = 44/1053 (4%)
Strand=Plus/Plus
Query 7 TTGATGGATAAGAATTTAGG-GTTAGTAGAGGTTCAGAAACTTGAAGGTCACACCGATCG 65
|||||||| ||||| || || |||||| ||| |||||||||| ||||| |||||||||||
Sbjct 106 TTGATGGAGAAGAACTT-GGAGTTAGTGGAGATTCAGAAACTAGAAGGCCACACCGATCG 164
Query 66 TGTTTGGAACGTCGCCTGGAATCCCG--------C-CGCCGAC-G-G--T----G-TTCT 107
|||||||| ||| || ||||| |||| | ||||||| | | | | ||||
Sbjct 165 TGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTTTCACCGATTCT 224
Query 108 TGCCTCCTGCAGTGCCGATAAGACCGTACGAATCTGGGAGCAGAGCTCGCT-TACTCGTT 166
||| || ||||||| |||||| || || ||||||||||| || ||||| || | |||| |
Sbjct 225 TGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCTCTCT-CTCGCT 283
Query 167 CCTGGACCTGCAAGGCAGTTTTGGAAG-GCACGCACACTAGAACTGTCAAGTCGTTAGCT 225
||||||| |||||| |||||||||||| | ||||| || |||||||| | ||||| |||
Sbjct 284 CCTGGACTTGCAAGACAGTTTTGGAAGAG-ACGCATACAAGAACTGTGAGGTCGTGCGCT 342
Query 226 TGGTCACCGTCTGCGA-AGTTATTGGCCACTGCAAGTTTCGATGGCACTACTTGCGTTTG 284
|||||||| || | || |||||||||||||||||||||| ||||| || ||| || ||||
Sbjct 343 TGGTCACCCTCAG-GACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACTGGCATTTG 401
Query 285 GGATAATTTTGCTACTGACTCCGAGTCTGTCTCCGTTTTACAGGTACATGAAAGCGAAGT 344
| | |||| | | |||| | |||| | | ||| ||| ||| |||||||| ||||||
Sbjct 402 GAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAAAACGAAGT 461
Query 345 CAAAAGTGTATCATGGAATGCATCTGGTTCGTTG-CTTGCAACATGTGGTAGAGACAAGT 403
|||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||
Sbjct 462 CAAAAGTGTATCATGGAATGCATCTGGTTC-ATGCCTTGCAACATGTAGTAGAGATAAGT 520
Query 404 CTGTCTGGATTTGGGAAGTAC-T-ACCGGAGAATGAATTTGATTGTGCTGCAGTGTTAAC 461
|||| |||||||||||||| | | | || |||||||| ||| |||||||| || |||||
Sbjct 521 CTGTTTGGATTTGGGAAGTGCTTGA-AGG-GAATGAATATGACTGTGCTGCGGTATTAAC 578
Query 462 TGGTCATTCAGAAGATGTTAAGATGGTCCTGTGGCATCCTACTATGGATGTTTTGTTCTC 521
||| ||| || ||||||| |||||||| | ||||||||| || ||||||||||| || ||
Sbjct 579 TGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTATTTTC 638
Query 522 TTGAAGTTATGATAACACTGTCAAGATTTGGTGGTCTGAGGATGAAGATGGTGATTAT-A 580
||| |||||||||||||| ||||| ||||||||||||| ||||| |||||||| ||| |
Sbjct 639 TTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAGTATCA 698
Query 581 ATTGTGTCCAAACCTTAGGTGAATCTAACAATGGTCATTCTTCCACCGTCTGGAGTATCT 640
| ||||||||||||||||||||||||||||| ||||| ||||| || || ||| ||||
Sbjct 699 A-TGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCCATCT 757
Query 641 CCTTTAATGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACAGTGAAAATAT 700
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 758 CATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAGATAT 817
Query 701 GGAAGACAGATATTTC-AAGGATGCAATCTGGTGAAGGATATGTACCCTGGACCCATGTT 759
|| |||||||||| | ||| ||||| |||||||||| ||||| ||| |||| ||| ||
Sbjct 818 GGGGGACAGATATTGCCAAG-ATGCAGTCTGGTGAAGAATATGCACCTTGGATTCATCTT 876
Query 760 TGTACACTCTCTG-CTTTTCACGATCGTACCATATATTCAGTTCATTGGTCAAGGGACGG 818
||||| ||||||| || | || || ||||||||||| |||| ||| |||||||||||||
Sbjct 877 TGTACTCTCTCTGGCTAT-CATGACCGTACCATATACTCAGCTCACTGGTCAAGGGACGA 935
Query 819 TGTTATTGCTAGCGGAGCAGGCGATGATACTATACAGTTATTTGTGGACAGCAA-CAGTG 877
||||||| || |||||||||||| || |||||| ||| |||||||||||||| || ||
Sbjct 936 CATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACA-TG 994
Query 878 ACTCTGTTGATAGACCTTCATACAAACTCTTGCTTAAGAAAGAG-AAAGCACATGAAAAG 936
||||||||||| |||||||||| || || ||||| ||||| || ||||||||||||||
Sbjct 995 ACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAA-GAATAAAGCACATGAAAAT 1053
Query 937 GATGTAAATTCAGTGCAATGGGCACCTGATAAGGA-AAGCCGGTTGCTTGCCTCGGCCAG 995
|||||||| || || |||||| |||| | | ||| || |||||||||||| ||||| ||
Sbjct 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAA-CCGGTTGCTTGCGTCGGCTAG 1112
Query 996 CGACGACAAAATGGTTAAGATTTGGAAGCTTGC 1028
|| || ||||| ||||||||| |||||||
Sbjct 1113 TGATGATGGGATGGTCAAGATTTGGCAGCTTGC 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5