BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888832
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32714.1 | Symbols: SCRL25 | SCR-like 25 | chr4:15784674-157... 344 2e-94
> AT4G32714.1 | Symbols: SCRL25 | SCR-like 25 | chr4:15784674-15785169
FORWARD LENGTH=264
Length=264
Score = 344 bits (186), Expect = 2e-94
Identities = 222/238 (93%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 1 GTTTCTTATGTTCTTGTCTTTCTCGTTCTTTGC-TCTTGTAAAG-A-TTCAA-CCAAAAA 56
|||||||| ||||||||||||||||||||| || || ||||||| | | || || |||
Sbjct 25 GTTTCTTACGTTCTTGTCTTTCTCGTTCTTAGCGTC-TGTAAAGAAGTGGAAGCC--AAA 81
Query 57 CGAACTGTGTAATAGAATAGAAGACATCGATGGAAATTGTGACTTTCAAGGAGAGAAGGG 116
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 82 -GAACTGTGTAATAGAATAGAAGACATCGATGGAAATTGTGACTTTGAAGGAGAGAAGGG 140
Query 117 GTGCTTGAAATTCATGACGAATAAGTATAAGAAAGAAAGACATGTTAGCTGCAAATGTAC 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 141 GTGCTTGAAATTCATGACGAATAAATATAAGAAAGAAAGACATGTTAGCTGCACATGTAC 200
Query 177 TAACCTTTACATGTTACACAAGACCAAACGTTTTTGCGACTGTAAACATCGATGCTCA 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 TAACCTTTACATGTTACACAAGACCAAACGTTTTTGCGACTGTAAACATCGCTGCTCA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5