BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888852
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26470.1 | Symbols: | Powdery mildew resistance protein, R... 1088 0.0
> AT3G26470.1 | Symbols: | Powdery mildew resistance protein,
RPW8 domain | chr3:9686098-9687642 FORWARD LENGTH=1454
Length=1454
Score = 1088 bits (589), Expect = 0.0
Identities = 651/681 (96%), Gaps = 3/681 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGTCACTGATTATTTCGCCGGTGAAATAGCGACGGAGCTTTTGAAGCAGCTCTTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 47 ATGGCCGTCACTGATTATTTCGCCGGTGAGATAGCGACGGAGCTTTTGAAGCAGCTCTTT 106
Query 61 CTGATATCTGCGAGAGCAGGCCGGTATAAAAACACTGCCGACAACCTCAGCACTTTGATT 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 107 CTGATATCTGCGAGAGCAGGCCGGTACAAAAACACAGCCGACAACCTCAGCACCTTGATC 166
Query 121 GAGAACATTCAACCAACGATCAAAGAGATCCAGTACAGTGGAGTTGAGCTGCCTGCTCAC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GAGAACATTCAACCGACGATCAAAGAGATCCAGTACAGTGGAGTTGAGCTGCCTGCTCAC 226
Query 181 CGCCAGGCTCAAATCCGTATACTCTTTGAGTCTCTAGAGAAGGGCAAGAAACTCATGGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CGCCAGGCTCAAATCCGTATACTCTTTGAGTCTCTAGAGAAGGGCAAGAAACTCATGGAC 286
Query 241 AAATTCTTAACATGCAATCGCTGGAATATGATTCGACAGTTATATCTCATGAAGAAAATG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAATTCTTAACATGCAATCGTTGGAATATGATTCGACAGTTATATCTCATGAAGAAAATG 346
Query 301 AAGAAGCTAGAGAAGACTCTCTCTGATTTCTTTAGGGCTTCCATTTTGACACACATCCTC 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GAGAAGCTAGAGAAGACCCTCTCTGATTTCTTTAGGGCTTCCATTTTGACACACATCCTT 406
Query 361 GCCGATCTTCATCTTCTACGAGCCAATTCTGATGAACGTTCCCATGAGCACGTCACATCA 420
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 407 GCCGATCTTCATCTTCTCCGGGCCAATTCTGATGAACGTTCCCATGAGCACGTCACATCA 466
Query 421 ACCAAAGGGTGTGACTATG--G-ACTTGGCTCAATTCAGTACCAGCACCTCCAGCCCAAC 477
||||||||||||||||| | | ||||||||||||||||||||||||| ||||||| |||
Sbjct 467 ACCAAAGGGTGTGACTACGACGGACTTGGCTCAATTCAGTACCAGCACATCCAGCCTAAC 526
Query 478 CTAGACATGGATATGCGGGTCACCATTTTGGAGACTGAATTCCGCACCTTCTCCAACAAC 537
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 527 CTAGACATGGATATGCGGGTCACCATTTTGGAGGCTGAATTCCGCACCTTCTCCAACAAC 586
Query 538 GTCACCAACAACATGCTGGCGATGAAGCGAGCGCAGGATGTGTTACTACGAGCCAACGGC 597
|||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 587 GTCATCAACAACATGCTTGCGATGAAGCGAGCGCAAGATGTCTTACTACGAGCCAACGGC 646
Query 598 ATTGACCCTGAGACCCTCCTACCGATGGTGTCTCGTCCTGCAGCCTCCATGAATCCTCCT 657
||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 647 TTTGACCCCGAGACCCTCCTACCGATGATGTCTCCTCCTGCAGCCTCCATGAATCCTCCT 706
Query 658 GCTTTAGCAGATACGACTTAG 678
|||| | || |||||||||||
Sbjct 707 GCTTGACCACATACGACTTAG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5