BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888853

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42660.1 | Symbols:  | Protein of unknown function (DUF616) ...   438    2e-122


> AT5G42660.1 | Symbols:  | Protein of unknown function (DUF616) 
| chr5:17102924-17105966 REVERSE LENGTH=1711
Length=1711

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 308/341 (90%), Gaps = 9/341 (3%)
 Strand=Plus/Plus

Query  60    GAG-GAATAAGAGTTTCCCGGTAAGGGAAACAGTTT-TGTTGCATTGTGGATTTTTTAAT  117
             ||| ||| || ||||| | ||||||||||||||||| | ||||||||||| ||||| |||
Sbjct  709   GAGAGAA-AATAGTTTTCAGGTAAGGGAAACAGTTTCT-TTGCATTGTGGGTTTTTCAAT  766

Query  118   GCTAATGGGGGATTTTGGATTTTGGATAAGGATAAGAGGTTTATGCA-AACATGTGAAGT  176
             |  |||||||||||| |||||| |||||||||||||| ||||||| | | ||||||||||
Sbjct  767   GAAAATGGGGGATTTAGGATTTCGGATAAGGATAAGAAGTTTATG-ACATCATGTGAAGT  825

Query  177   TGTAGTCTCGACGTGTGCTTTTGGTGGTGGAGATAAAATCTTTATGAACCTATTGGAATG  236
              || |||||||||||||| |||||||||||||||  || |||||||||||||||||||||
Sbjct  826   AGTGGTCTCGACGTGTGCGTTTGGTGGTGGAGAT--AACCTTTATGAACCTATTGGAATG  883

Query  237   TCTAAGGCATCAAGTCACAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCA  296
             |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  884   TCTAAGACATCAAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACA  943

Query  297   ATACAAGAAGCAGAGGGGTCATAAGATCAATGAGAATGATCACATTGGAAAGTGGCGTAT  356
             | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  944   ACACAAGAAGCAGA-GGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTAT  1002

Query  357   AGTGATTGTAAAGGATATGCCGTTTACAGACCAAAGGCTTA  397
              ||||||||||||||| | || |||||||||||||||||||
Sbjct  1003  TGTGATTGTAAAGGATCTTCCTTTTACAGACCAAAGGCTTA  1043



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5