BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888853 Length=423 Score E Sequences producing significant alignments: (Bits) Value AT5G42660.1 | Symbols: | Protein of unknown function (DUF616) ... 438 2e-122 > AT5G42660.1 | Symbols: | Protein of unknown function (DUF616) | chr5:17102924-17105966 REVERSE LENGTH=1711 Length=1711 Score = 438 bits (237), Expect = 2e-122 Identities = 308/341 (90%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 60 GAG-GAATAAGAGTTTCCCGGTAAGGGAAACAGTTT-TGTTGCATTGTGGATTTTTTAAT 117 ||| ||| || ||||| | ||||||||||||||||| | ||||||||||| ||||| ||| Sbjct 709 GAGAGAA-AATAGTTTTCAGGTAAGGGAAACAGTTTCT-TTGCATTGTGGGTTTTTCAAT 766 Query 118 GCTAATGGGGGATTTTGGATTTTGGATAAGGATAAGAGGTTTATGCA-AACATGTGAAGT 176 | |||||||||||| |||||| |||||||||||||| ||||||| | | |||||||||| Sbjct 767 GAAAATGGGGGATTTAGGATTTCGGATAAGGATAAGAAGTTTATG-ACATCATGTGAAGT 825 Query 177 TGTAGTCTCGACGTGTGCTTTTGGTGGTGGAGATAAAATCTTTATGAACCTATTGGAATG 236 || |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| Sbjct 826 AGTGGTCTCGACGTGTGCGTTTGGTGGTGGAGAT--AACCTTTATGAACCTATTGGAATG 883 Query 237 TCTAAGGCATCAAGTCACAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCA 296 |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 884 TCTAAGACATCAAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACA 943 Query 297 ATACAAGAAGCAGAGGGGTCATAAGATCAATGAGAATGATCACATTGGAAAGTGGCGTAT 356 | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 944 ACACAAGAAGCAGA-GGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTAT 1002 Query 357 AGTGATTGTAAAGGATATGCCGTTTACAGACCAAAGGCTTA 397 ||||||||||||||| | || ||||||||||||||||||| Sbjct 1003 TGTGATTGTAAAGGATCTTCCTTTTACAGACCAAAGGCTTA 1043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20056831851 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5