BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888855
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 924 0.0
> AT4G32680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52343.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:15763237-15765114 REVERSE LENGTH=1149
Length=1149
Score = 924 bits (500), Expect = 0.0
Identities = 598/644 (93%), Gaps = 12/644 (2%)
Strand=Plus/Plus
Query 1265 CTTTCACAAGTCACCAGGAAAACATCTCTGATGCTGTGATGCTTGAAAATGCGGATAGTA 1324
||||||||||||||||||| |||||||||||||||| |||||||| ||| | | | |
Sbjct 287 CTTTCACAAGTCACCAGGACAACATCTCTGATGCTGCAATGCTTGAGAAT---G-T-GGA 341
Query 1325 TGAGTATCATCCATCAAAGCAGAGAAGAATCACTTCAGCCTCAGAGGTATTCTGAAACAT 1384
| | |||||||||||||||||| |||||| | ||||||||||||||| || |||||||||
Sbjct 342 TCA-TATCATCCATCAAAGCAGGGAAGAACCTCTTCAGCCTCAGAGGCATGCTGAAACAT 400
Query 1385 TGGCAGAAGCCTGTGCTTCAGATCCTAGAG--AC-ACAACAATACAACCGTCTCCT---A 1438
|||||||||||| ||||||||||||||||| || ||||||||||||||| ||||| |
Sbjct 401 TGGCAGAAGCCTCTGCTTCAGATCCTAGAGACACAACAACAATACAACCGCCTCCTACAA 460
Query 1439 CATCAAGTGCTCAAAACCCATCAGTGGTAGATTTACGTGCTTCTCAAGCATTTATTCCTG 1498
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 461 CATCAAGTGTTCAAAACCCATCAGTGGTAGATTTAGGTGCTTCTCAAGCATTTATTCCTG 520
Query 1499 TGGTTAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATCGATGCTTCAG 1558
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 521 TGGTTAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATTGATGCTTCGG 580
Query 1559 AACACGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTGATACTATCTCATCTTG 1618
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 581 AATACGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCG 640
Query 1619 GTTTCTCTTCCCTAGGCAACATAGTAAGCTTCAGGCCAGTTTTCTTGCTTCTCTTGACCG 1678
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 641 GTTTCTCTTCCCTAGGCAACATTGTAAGCTTCAGGCCAGTTTTCTTGCTTGTCTTGACTG 700
Query 1679 ATGCCACAATTGTACTTGGACGTTTTCTGCTGAGTCACCGTGGAGATTCTTCCACAGCCT 1738
||||||||||||| ||||||||| ||||||||||||| |||||||| |||||| | ||||
Sbjct 701 ATGCCACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCGTGGAGACTCTTCCTCGGCCT 760
Query 1739 CAGGGACAGTAATGAGCGGGCAGGGTATAGTGGACCAAGTAGGCAACGCTTTGGAGACGG 1798
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 CAGGGACGGTGATGAGCGGGCAGGGTATTGTGGACCAAGTAGGCAACGCTTTGGAGACGG 820
Query 1799 TGATGATGATGAAGAAGATAATGGATGCACTGCTTATGGATTTTAGCTTATACGCTGTGA 1858
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 821 TGATGATGGTGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGA 880
Query 1859 TTCTCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 1902
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TTCTCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5