BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888858
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32510.1 | Symbols: | HCO3- transporter family | chr4:15685... 3155 0.0
> AT4G32510.1 | Symbols: | HCO3- transporter family | chr4:15685903-15688811
REVERSE LENGTH=2022
Length=2022
Score = 3155 bits (1708), Expect = 0.0
Identities = 1960/2073 (95%), Gaps = 51/2073 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGGAGTTAAATTCCCATTTGGTGGGATTATTAACGATTTCAACGGAAGAAGAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGGGAGTTAAATTCCCATTTGGTGGGATTATTAACGATTTCAATGGAAGAAGAAAG 60
Query 61 TGTTACAAACAAGACTGGCTTGCTGCCTTCAATTCTGGTGTTAGGTATCATCATGTCTCC 120
||||||||||||||||||||||||||||||||||||||||||||| || | | || ||||
Sbjct 61 TGTTACAAACAAGACTGGCTTGCTGCCTTCAATTCTGGTGTTAGG-AT-A-C-TGGCTCC 116
Query 121 TTGCTTATTTCGATACTGGCTCCAACTCTGTATATTTTCATTGCCTCTGCACTACCTGTG 180
| | || ||| | ||||||||||||||||||||||||||||
Sbjct 117 ------A-----A--CT--CTC----T----ATATTTTCATTGCCTCTGCACTACCTGTC 153
Query 181 ATTGCTTTCGGCGAGCAGTTAAGCAGAGAGACAGGTGATCGCAGTCTTGGCATAGCGGAA 240
||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 154 ATTGCATTCGGCGAGCAGTTAAGCAGAGAGACAG---ATCGAAGTCTTGGCATAGCGGAA 210
Query 241 TCATTAGCTTCCACAGCTATTTGTGGAATTATTCATTCAATTTTTGGTGGACAACCTCTC 300
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 211 TCATTAGCTTCCACAGCTCTTTGTGGAATTATTCATTCAGTTTTTGGTGGACAACCTCTC 270
Query 301 TTGATAGTAGGGGTTGCAGAACCCACTATCATTATGTATACATATCTTCACAGCTTCAGC 360
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 271 TTGATAGTTGGTGTTGCAGAACCCACTATCATTATGTATACTTATCTTCACAGCTTCAGC 330
Query 361 AAAGGCAGACCTGAATTGGGTCAGAAACTCTACTTAGCTTGGGCTGGATGGGTCTGTGTC 420
||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 331 AAATCCAGGCCTGAATTGGGTCAGAAACTCTACCTAGCTTGGGCTGGATGGGTCTGTGTC 390
Query 421 TGGACAGCAATTTTGCTTATGCTTCTTGCTATGCTAAACGCATGCAACATCATTTCTAGG 480
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 391 TGGACAGCAGTTTTGCTTATGCTTCTTGCTATGTTAAACGCATGCAACATCATTTCTAGG 450
Query 481 TTTACAAGAATTGCAGGAGAGCTCTTTGGAATGCTGATCACTGTTCTTTTTATCCAAGAG 540
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 451 TTTACAAGAATTGCAGGAGAGCTCTTTGGAATGCTCATAACTGTTCTTTTCATCCAAGAG 510
Query 541 GCTGTTAAGGTTCTGATGGGTAATTCCATGGGACTTATAGGCGAGTTTCTTGTCCCAAAA 600
|||||||||| || | | || | |||||||||||||||||||||
Sbjct 511 GCTGTTAAGG----GAC---T--T---AT----C-----GGCGAGTTTCTTGTCCCAAAA 549
Query 601 TCTGACGATCCAAGTTTGGAAGCGTATCAGTTCCAGTGGCGGTATACCAATGGTCTGCTT 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 550 TCTGACGATCCAAGTTTGGAAGTGTATCAGTTCCAGTGGCGGTATACCAATGGTCTGCTT 609
Query 661 GCCGTCATATTCTCATTCGGTCTTCTTTACACTGCTCTGAAAAGCAGGAGGGCGAGATCA 720
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 610 GCAGTCATTTTCTCATTCGGTCTTCTTTACACTGCTCTGAAAAGCAGGAGGGCAAGATCA 669
Query 721 TGGAAATATGGCTTTAGGTGGATAAGAGGTTTTATAGGGGATTATGGAACTCTCCTCATG 780
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 670 TGGAAATATGGCTTTAGGTGGATGCGAGGTTTTATCGGGGATTATGGAACTCTCCTCATG 729
Query 781 CTTGTGTTGTGGAGCGCATTTTCATACACAGTCCCTAGAAACCTTCCTGAAGGAGTTCCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CTTGTGTTGTGGAGCGCATTTTCATACACAGTCCCTAGAAACCTTCCTGAAGGAGTTCCA 789
Query 841 AGGAGGCTGGAGTTGCCACTTCCTTGGTCATCCGAGTCCTTGTATCATTGGACAGTCGTC 900
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 790 AGGAGGCTGGAATTGCCACTTCCTTGGGCATCCGAGTCCTTGTATCACTGGACAGTCGTC 849
Query 901 AAGGATATGGCAAAGGTCCCGCCTCTTTACATCCTTGCTGCATTTATACCAGCAATCATG 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AAGGATATGGCGAAGGTCCCGCCTCTTTACATCCTTGCTGCATTTATACCAGCAATCATG 909
Query 961 ATCGCTGGCCTATACTTCTTTGACCACTGTGTATCTGCACAAATGGCTCAGCAGAAGGAG 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 910 ATCGCTGGCCTATACTTCTTTGATCACTGTGTATCTGCACAAATGGCTCAGCAAAAGGAG 969
Query 1021 TTTAATCTCAAAAATCCGTCGGCTTATCACTATGATATCTTTATCTTAGGAATCATGACA 1080
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 970 TTCAATCTCAAAAATCCGACGGCTTATCACTATGATATCTTTATTTTAGGAATCATGACA 1029
Query 1081 TTAATCTGTGGCCTTCTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATG 1140
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATG 1089
Query 1141 CACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGCTAATGCGAAAGAAAATGGTCCAGAAA 1200
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1090 CACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGCAAATGAGAAAGAAAATGGTCCAGAAA 1149
Query 1201 GCAAAAGAATGCATGAGGGAAAAAGCAAGCAACTCAGAGATCTATGGGAGGATGCAAGAT 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1150 GCAAAAGAATGCATGAGGGAAAAAGCAAGTAACTCAGAGATCTATGGGAGGATGCAAGAT 1209
Query 1261 GTGTTTATAGAGATGGAAACATCCCCTAAGGCTACTTCAGTGGTGAAGGAGTTGGAGAAC 1320
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1210 GTGTTTATAGAAATGGAAACATCCCCTAAGGCTACTTCAGTGGTGAAAGAGTTAGAAAAC 1269
Query 1321 TTGAAAGAAGCAGTGATGAAAGCAGACGATGGAGGTGGAGAAACAAAGGGGAAGAAATTC 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1270 TTGAAAGAAGCAGTGATGAAAGCAGACGATGGAGGTGGAGAAACAAAGGGGAAGAAGTTT 1329
Query 1381 GATCCAGAGGTACATATCGAAGACCATTTGCCGGTTAGAGTAAACGAGCAGAGAGTGAGC 1440
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1330 GATCCAGAGGTACATATCGAAGACCATTTGCCGGTTAGAGTTAACGAGCAGAGAGTGAGC 1389
Query 1441 AATCTATTGCAATCAATCCTTGTTGGATTGTTGATACTAGCTGTACCAGTTCTCAGAATG 1500
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1390 AATCTATTGCAATCAGTCCTTGTTGGATTGTTGATACTAGCGGTACCAGTTCTCAGAATG 1449
Query 1501 ATACCAACTTCAGTTCTATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 ATACCAACTTCAGTTCTATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGG 1509
Query 1561 AATCAGTTCTGGGAAAGACTTCAGTTACTTTTCATCACTCCTGGTCGTCGATTCAAAGTT 1620
||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1510 AATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAGGTT 1569
Query 1621 CTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTCTATTGTTATGTTT 1680
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1570 CTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTCGATTGTTATGTTC 1629
Query 1681 ACACTCTTCCAGCTTCTATATTTTCTGATATGCTATGGAGTGACATGGATACCTGTAGGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 ACACTCTTCCAGCTTCTATATTTTCTGATATGCTATGGAGTGACATGGATACCTGTAGGA 1689
Query 1741 GGAATATTGTTCCCATTGCCATTCTTCATCCTCATTGCGTTAAGACAATACATCCTCCCG 1800
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1690 GGAATATTGTTCCCTTTGCCATTCTTCATCCTCATTGCGTTACGACAATACATCCTCCAG 1749
Query 1801 AGGCTTTTTGATCCATCTCATCTCCAAGTTTTAGATTCTTCAGAGTATGAAGAGATGGTT 1860
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 AGACTTTTTGATCCATCTCATCTCCAAGTTTTAGATTCTTCAGAGTATGAAGAGATGGTT 1809
Query 1861 GGTGCACCACAACGAAACTCCAGCTTCGGTTTCAATGGGGAATTAAGAGAGGCGCATAAT 1920
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1810 GGTGCACCACAACGAAACTCCAGCTTCGGCTTCAATGGGGAATTAAGAGAGGCGCATAAT 1869
Query 1921 ATTCCACTGAGTGTTGTTGAGAACAGTGAAGACGAGTTTTATGATGCAGAGATTCTGGAT 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 ATTCCACTGAGTGTTGTTGAGAACAGTGAAGACGAGTTTTATGATGCAGAGATTCTGGAT 1929
Query 1981 GAGATTACTACAAGCAGAGGTGAACTCAAGCATAGAACTTTAAGTGTCAAAGAAGACAGA 2040
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1930 GAGATTACTACAAGCAGAGGTGAACTCAAGCATAGAACCTTAAGTGTCAAAGAAGACAGA 1989
Query 2041 TCCCAGATGGTAAAAATATATAACCATTCTTGA 2073
|||||||||||||||||||||||||||||||||
Sbjct 1990 TCCCAGATGGTAAAAATATATAACCATTCTTGA 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5