BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888860
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32490.1 | Symbols: ENODL4, AtENODL4 | early nodulin-like pr... 965 0.0
> AT4G32490.1 | Symbols: ENODL4, AtENODL4 | early nodulin-like
protein 4 | chr4:15678647-15679652 REVERSE LENGTH=926
Length=926
Score = 965 bits (522), Expect = 0.0
Identities = 620/668 (93%), Gaps = 4/668 (1%)
Strand=Plus/Plus
Query 1 ATGG-TTATGATCAAAATGTTTGATGTTTACTTGATGATTGTGATGTTGATGAGTTTGGG 59
|||| || || |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 97 ATGGTTTTTG-TCAAAATGACTGATGTTTACTTGATGATTGTGATGTTGATGGGTTTGGG 155
Query 60 GTTTACTATGGGGTTATCAAATGGGCACAAGTT-TGATGTTGGTGGGAGAGATGGTTGGG 118
||||| ||| | ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 156 GTTTAGTATAGAGTTATCAAATGGGCACAAGTTCT-ATGTTGGTGGGAGAGATGGTTGGG 214
Query 119 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACAGAAACCGGTTTCAGGTCAACG 178
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 215 TCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACCGAAACCGGTTTCAAGTCAACG 274
Query 179 ACACTCTTTATTTTAAGCACGTGAAGGGAAAAGATTCAGTGTTGAATGTGAGTGAAAAAG 238
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 275 ACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTCAGTGTTGGAGGTGAGTGAAAAAG 334
Query 239 AGTACAAGACATGCAACACGACTCACCCTTTGGCTTCCCTCTCAGGCGGTGACTCTCTCT 298
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 335 AGTACAACACATGCAACACGACTCACCCTTTGACTTCCCTCTCAGACGGTGACTCTCTCT 394
Query 299 TCCTACTTAGCCGCTCAGGCCCCTTCTTCTTCGTCAGCGGCAACTCCGGAAACTGTCTCA 358
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 395 TCCTACTTAGCCGCTCAGACCCATTCTTCTTCGTCAGCGGCAACTCCGGATCCTGTCTCA 454
Query 359 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACGGGACACCACAGCCACACTCCTCGTC 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 455 AAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACCGGACACCACAGCCACACTCCTCGTC 514
Query 419 ATCCCTCTCCTTCCCCGTCCCCCTCAGCATCTCCGGTCCATCAGGCTTTGTCATCACCAG 478
|||||||||||||||| ||||||||||| |||||||||| | ||||||||| ||| ||||
Sbjct 515 ATCCCTCTCCTTCCCCTTCCCCCTCAGCGTCTCCGGTCCGTAAGGCTTTGTTATCGCCAG 574
Query 479 CGCCCACTCCGGTCCATCAGGCTTTGTCATTGCCAGCGCCTACTCCGGGAGTGGATCCCT 538
|||| | |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 575 CGCCTATTCCGGTCCATAAGGCTTTGTCATCGCCAGCGCCTACTCCGGGAGTGGATCCCT 634
Query 539 CTGATTCAGAAGTTCTTGCTCCAGCTCCAGGGTCCGTGGCAGCGGTTCGCAATTTGGCCG 598
| |||||||||||||||| || ||||||||| ||| ||||| ||||||||||||||||
Sbjct 635 CCCATTCAGAAGTTCTTGCGCCGGCTCCAGGGCCCGCCGCAGCTGTTCGCAATTTGGCCG 694
Query 599 GTTCCGTTGGTCCGGGGGTGGTTTCCCTAGGCTTGGTTCATGTGATTATGATAAGTTCCA 658
||||||||| |||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 695 GTTCCGTTGCTCCGGGAGTGATTTCTCTAGGCTTGGTTCTTGTGATTATGATAAGTTCCA 754
Query 659 TGATTTAG 666
|| |||||
Sbjct 755 TGGTTTAG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5