BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888871
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32380.1 | Symbols: | Pectin lyase-like superfamily protein... 1232 0.0
> AT4G32380.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:15633641-15635467 FORWARD LENGTH=1112
Length=1112
Score = 1232 bits (667), Expect = 0.0
Identities = 885/985 (90%), Gaps = 36/985 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAAAGACTGGGGAAGCAA-AATAAGTGAGTGTTGGTTATGTTTTGAGAAGGTGAC 59
|||||||| ||||||||||| || || | ||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGCAAACGACTGGGGAAGGAATAA-ACTTGACTGTTGGTTATGTTTTGAAAAGGTGAC 59
Query 60 AGGTCTCGTTCTCACTGGATCCGGTGTCCTCAATTCCCATGGAGAAAACTGGTGGTCTTC 119
||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 60 AGGCCTCGTTCTCACTGGATCCGGTGTCCTCAATACCCATGGAGAAAGCTGGTGGTCTTC 119
Query 120 TGTTGGTTTCCCCTCTCGACCAGAGGCAGTAAGATTTTTTGGATGCCAAAACCTTTTATA 179
||||| | ||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 120 TGTTGCTCTCCAATCTCGACCAGTGGCAGTAAGATTTTTTGGATGCCAAAACATTTTATA 179
Query 180 TAAAGGATTAACTCAGATCAATAGTCCAAGGAATCACATATCGATTTTTGGCT-GCACCA 238
||| |||||||||||||||||||||||||||||||||||| ||| |||||| | ||| ||
Sbjct 180 TAATGGATTAACTCAGATCAATAGTCCAAGGAATCACATAACGA-TTTTGGATAGCAACA 238
Query 239 ACGCAACTTTATCAAATCTTCATCTAATTGCCCCTGCAAATAGTCCAAATACTGATGGCA 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 ACGCAACTTTATCAAATCTTCATCTAATTGCCCCTGCAAGTAGTCCAAATACTGATGGCA 298
Query 299 TTGATATCTCTCATTCACAGAATATCCATGTTTTGAGCTCGACAATCAACACCGGTGATG 358
||||||||||||||||||| |||||| || || ||||||| |||||||| ||||||||||
Sbjct 299 TTGATATCTCTCATTCACAAAATATCAATATTATGAGCTCCACAATCAAAACCGGTGATG 358
Query 359 ACTGTGTTGCAATTAAAGGTGCTTCATACGATATTAACATAACTTATGTGACATGTGGTC 418
||||||||||||||||| || ||||||| |||||||| ||||||| |||||||||||||
Sbjct 359 ACTGTGTTGCAATTAAACGTAATTCATACAATATTAACGTAACTTACGTGACATGTGGTC 418
Query 419 CGGGTCATGGCATAAGTATCGGAAGTTTGGGGCAAGGAGGGGCATCTGAGGTAGTACAAA 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 CGGGTCATGGCATAAGTATCGGAAGTTTGGGGGAAGGAGGGGCATCTGAGGTAGTACAAA 478
Query 479 ATGTGAATGTCAGACATTGCACCTTCAGTGGAACACAAAATGGTGCAAGAATCAAGACTT 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 ATGTGAATGTCAGACATTGCACCTTCACTGGAACACAAAATGGTGCAAGAATCAAGACTT 538
Query 539 GGCCTGGAGGACGAGGGTTTGTCAAAAATATTTTGTACGAAAATATTACTCTGATAAATG 598
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 539 GGCCTGGAGGACAAGGGTTTGTCAAAAATATTTTGTACGAAGATATTACTCTAATAAATG 598
Query 599 CCAACTTCCCCATCATCATCGATCAACAATATC---AT----C-----AAT-----CA-- 639
||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 599 CCAACTTCCCCATCATCATCGATCAACAATATCGTGATAATGCTGGTCAATATAAACAAT 658
Query 640 --GCAGGGGCTACTGCTGTGAAAGTGAGCGACGTGACGTTTAAATCTTTCAAAGGGACAT 697
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
Sbjct 659 CAGCAGGGGCTACTGCTGTGAAAGTGAGCGACGTGACGTTTAGATCATTCACAGGGACTT 718
Query 698 CTGCCGATGCTACTGCAATAAAATTAGATTGTGACCCGACA-ACAGGTTGTGATAACATC 756
||||| | ||| |||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct 719 GTGCCGCTCCTATTGCAATAAAACTAGATTGTGACCCGA-ATACAGGTTGTGACAACATC 777
Query 757 GTGATGGACCACATCAATATCGTTTCTTCATCTCCGAGAACGCCACTCACCTCGTACTGC 816
|||||||| || |||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 778 GTGATGGAACAAATCAATATCGCTTCTTCATCTCCGAAAACGCCGCTCACCTCGTACTGC 837
Query 817 AAATTTGCGCATGTAATTAGTCGCGTTGTCTCCATTCGCATCGAC-TGT-GATTTTCGTA 874
|||||||||||||| |||||||| |||||||||||| ||| || ||| | ||||| ||
Sbjct 838 AAATTTGCGCATGTCGTTAGTCGCTTTGTCTCCATTCCCATA-ACCTGTAG-TTTTCATA 895
Query 875 ATGAAGATTCTCAACCTGCGTCA-TCGCATCCTCAACCTTCCGCACCATCTGCTGTATCC 933
|||||||||||||||||||||| | | ||||||||||||||||||| | |||| |||||
Sbjct 896 CTGAAGATTCTCAACCTGCGTCACT-GAATCCTCAACCTTCCGCACCGTATGCTATATCC 954
Query 934 CCGA--A-ACCGCATACTCAACCTC 955
|||| | |||||||||||| ||||
Sbjct 955 CCGACGACACCGCATACTCAGCCTC 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5