BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888872
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32375.1 | Symbols: | Pectin lyase-like superfamily protein... 1672 0.0
> AT4G32375.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:15628873-15631596 FORWARD LENGTH=1461
Length=1461
Score = 1672 bits (905), Expect = 0.0
Identities = 1070/1149 (93%), Gaps = 13/1149 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCAAATGGCGTTTAAAGGGGCATGGAAAGCATTATGTGAAGCAAATGGGAAAGGC 60
|||||||||||||||||||||| ||||||||| || |||||||||||||||| ||| |||
Sbjct 1 ATGGTTCAAATGGCGTTTAAAGAGGCATGGAATGCGTTATGTGAAGCAAATGTGAATGGC 60
Query 61 AAAACAACATCTCTTGTAATAAATGCCAACGAAACATATATCATACAACCCCAATTGTTT 120
| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 ACAACAACATCTCTTGTAATAAATGCCAACGAAACATATATCGTACAACCCCAGTTGTTT 120
Query 121 CAAGGTCCTTGTGCATCTCGTAATCTTCATATTCAGATTGATGGAAAACTTGAAGCGCCA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CAAGGTCCTTGTGCATCTCGTAATATTCATATTCAGATTGATGGAAAACTTGAAGCGCCA 180
Query 181 AAGATGGTAAAGGAGTGGGGAAACAACGGAAGTAAATGTTGGTTATGTTTCACAAACGTG 240
|||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 181 AAGATGGTAAGGGAGTGGGGAAACTACGAAAGTAAATGTTGGTTATGTTTCACAAACGTG 240
Query 241 ACAGGTCTCGTCCTCAATGGATCTGGTATCCTCCATCCCCATGGCGAAGCTTGGTGGTCC 300
| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 241 AAAGGTCTCGTCCTCAATGGATCTGGGATTCTCCATCCCCATGGTGAAGCTTGGTGGTCC 300
Query 301 TCTATTGAGCACTCCCACCGACCACGAACAATAGGATTTAATGGGAGTAGTAACAT-TAT 359
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
Sbjct 301 TCTATTGAGCACTCCCACCGACCACGAACAATAGGATTTAGTGGAAGTAGTAACATCT-T 359
Query 360 ATATAATGGACTAACCCAAATGAATAGCCCAAAGAATCACATTTCTATTTTAAATTGCAC 419
||||||||| || || || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 ATATAATGGGCTCACTCAGATGAATAGCCCAAAGAATCACATTTCTATTTTAGATTGCAC 419
Query 420 CAACGTAACTTTATCAAATTTTCATCTAATCGCACCTAAAGATAGTCCAAATACTGATGG 479
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 420 CAACGTAACTTTATCAAACTTCCATCTAATCGCACCGAAAGATAGTCCAAATACTGATGG 479
Query 480 CATTGATATTGCTCTTTCAAACAATATCCGGATTTTTAACTCATCTATCCAAACCGGTGA 539
||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 480 CATCGATATTGCTCATTCAAACAATATCCGAATTTTCAACTCATCTATCCAAACCGGTGA 539
Query 540 TGATTGTGTTGCGATAAATGGTGGTTCGTATGATATCAACATAACTCATGTAGCATGTGG 599
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTGTATTGCGATTAATGGTGGTTCGTATGATATCAACATAACTCATGTAGCATGTGG 599
Query 600 TCCAGGTCATGGCATCAGTATTGGAAGTTTGGGGAGAGGTGGGGAAAACGATACGGTACA 659
||||||||||||||||||||||||||||||||||||| | | | |||||||||||| ||
Sbjct 600 TCCAGGTCATGGCATCAGTATTGGAAGTTTGGGGAGATATAGTGTAAACGATACGGTCCA 659
Query 660 GAACGTGAAAGTAAGACACTGCAGCTTCAATGGAACAAAAAATGGAGCAAGAATAAAGAC 719
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 GAACGTAAAAATAAGACACTGCAGCTTCAATGGAACAGAAAATGGAGCAAGAATAAAGAC 719
Query 720 TTGGACTG---GAGGA---CAAGGGATCGCCAAAAATATATTATACGAGAATATAACATT 773
|||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 720 TTGGACTGTAAGAGGAGGTCTCGGGGTCGCCAAAAATATATTATACGAGAATATAACATT 779
Query 774 AACAGATGCCAATTACCCTATCATCATCGATCAACATTACTGTAATGGTGGCCACAACTG 833
||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 AACAGATACCAAATATCCTATCATCATCGATCAACATTACTGTAATGGTGGCCACAATTG 839
Query 834 TACAAAAGAGGCGACAACTGCTGTGAAAGTGAGCAATGTGACATTTAGATACTTTAAAGG 893
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TACAAAAGAGGCGATGACTGCTGTGAAAGTGAGCAATGTGACATTTAGATACTTTACAGG 899
Query 894 GACATGTGCAAATGATATTGCGATAAAACTAGATTGTGATGAAGTAACTGGTTGTCAAGA 953
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 900 AACATGTGCAAATGATATTGCGATAAAACTAGATTGTGATGAAGTAACGGGTTGTAAAGA 959
Query 954 TATCGTGATGGAACACATCAACATCACTTCTTCATCTACGAATATGCCCCTAACCGCATA 1013
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 960 TATCGTGATGGAACACATCAACATCACTTCTTCATCTACGAAAAGGCCTCTAACCGCATA 1019
Query 1014 TTGTCAATTTGCGGATATAGTTAGTCACTTTGTCTCGATGCATATCAAATGTGGTT-TCA 1072
||||||||||||||||||| |||||||||||||||| ||| | |||||||||| || | |
Sbjct 1020 TTGTCAATTTGCGGATATAATTAGTCACTTTGTCTCCATGAAAATCAAATGTGATTATTA 1079
Query 1073 ATGAAGAACCTTTAGTACCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGA 1132
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |
Sbjct 1080 -TGAAGAACCTTTAGTACCAGTTGAACCTCCACAACAGGTTGAACCTCCAACGCCG---A 1135
Query 1133 CTAAACCTC 1141
|||||||||
Sbjct 1136 CTAAACCTC 1144
Score = 156 bits (84), Expect = 6e-37
Identities = 105/114 (92%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 1090 CCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAACCTCCAACCATG 1149
|||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1300 CCAGCTAAACCTCCACGACACGTTGAACCTCCAA---TGCCGACTAAACCTCCAACCATG 1356
Query 1150 TTTCCTAAACC-TCTGGCACCAGCTAAACCTCCGGTATACTATGCTAAACCTCC 1202
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1357 TTTCCTAAACCAT-TGGCACCAGCTAAACCTCCTGTATACTATGCTAAACCTCC 1409
Score = 121 bits (65), Expect = 2e-26
Identities = 91/103 (88%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 1079 AACCTTTAGTACCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAAC 1138
||||| | | ||||| |||| |||||||||| ||||||| ||||| |||||||||||
Sbjct 1214 AACCTCTGGCACCAGCTAAATCTCCACGACACGTTGAACTTCCAA---TGCCGACTAAAC 1270
Query 1139 CTCCAACCATGTTTCCTAAACCTCTGGCACCAGCTAAACCTCC 1181
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1271 CTCCAACCATGTTTCCTAAACCTCTGGCTCCAGCTAAACCTCC 1313
Score = 117 bits (63), Expect = 3e-25
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 1090 CCAGTTAAACCTCCACGACATGTTGAACCTCCAACGCCGCCGACTAAACCTCCAACCATG 1149
|||| ||||||||||||||| |||| ||||| || ||||||||||||||||||||||
Sbjct 1150 CCAGCTAAACCTCCACGACACGTTGGACCTCTAA---TGCCGACTAAACCTCCAACCATG 1206
Query 1150 TTTCCTAAACCTCTGGCACCAGCTAAACCTCC 1181
||||||||||||||||||||||||||| ||||
Sbjct 1207 TTTCCTAAACCTCTGGCACCAGCTAAATCTCC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5