BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888873
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32370.1 | Symbols: | Pectin lyase-like superfamily protein... 1467 0.0
> AT4G32370.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:15625558-15627517 FORWARD LENGTH=1029
Length=1029
Score = 1467 bits (794), Expect = 0.0
Identities = 905/958 (94%), Gaps = 10/958 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGATTTTAAAACATTGTTCTCAGTGATCATAATTATATCCTACTATTTGGAATAC 60
||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||||
Sbjct 22 ATGAAGGATTTTAAAACATTGTTCTCATTGATTATAGTTATATCATACTATTTCGAATAT 81
Query 61 GGAGAAGGCCAGAA-AATTCTAAGCATCAAGGATTTTA-TACTTAAAACTAATCACACCA 118
||||||||||| || ||||||||||||||||||||||| || || | |||||||||||||
Sbjct 82 GGAGAAGGCCA-AAGAATTCTAAGCATCAAGGATTTTATTA-TTGATACTAATCACACCA 139
Query 119 TCATTGATTATTCTCAAGCCTTTCACGAAGCATGGAAAGGATTATGCGAAGATGAAACAC 178
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 140 TCATTGATTATTCTCAAGCATTTCAAGAAGCATGGAAAGGATTATGCGAAGATGAAACAC 199
Query 179 CCAACGGGTCAGCTTTAGTGATACGAAAGAACGAAACGTACACTTTACAACCATTAATTT 238
||||||| ||||||||||||||||||||||||||||| || ||||||||||||| || ||
Sbjct 200 CCAACGGCTCAGCTTTAGTGATACGAAAGAACGAAACATATACTTTACAACCATCAACTT 259
Query 239 TTCGAGGTCCATGTGTATCTTCTAAGATTCATATTCAGATTGATGGAAAACTCGAAGGGC 298
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 260 TTCGAGGTCCATGCGTATCTTCTAACATTCATATTCAGATTGATGGAAAACTCGAAGGGC 319
Query 299 CAAGGAAGCCGATATATTGGAAAAACACAGaaaaaaaGAGTTGGTTAGGTTTCAGGGATG 358
||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct 320 CAAGGAAGCCGATATATTGGAAAAACAAAGAAAACAGGAGTTGGTTAGGTTTCAAGGATG 379
Query 359 TAGAAGGTCTCGTCATCAACGGCTCAGGAGTGCTTAATCCTCATGGGGAAGCTTGGTGGA 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 380 TAGAAGGTCTCGTCATCAACGGCTCAGGAGTTCTTAATCCTCATGGGGAAGCTTGGTGGA 439
Query 419 AATCTGTTAGTCACTCTAAACGACCAACGACAATTAGTTTTGAGTCCTGCACT-GACATT 477
|||||||||||| ||||||||||||||| ||||||||||||| ||| |||| | ||||||
Sbjct 440 AATCTGTTAGTCTCTCTAAACGACCAACAACAATTAGTTTTGCGTCATGCA-TGGACATT 498
Query 478 ATATATAATGGACTAAC-TCAAATAAATAGCCCAAAAAATCACATTTCAATTTATGGTTG 536
||||||||||||| || ||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 499 GTATATAATGGACT-ACATCACATAAATAGTCCAAGAAATCACATTTCAATTTATGGTTG 557
Query 537 CACCAATGCAACTTTATCAAATCTTGATATAAGCGCACCCGAAGACAGTCCAAACACTGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 CACCAATGCAACTTTATCAAATCTTGATATAAGCGCACCCGAAGACAGTCCAAACACGGA 617
Query 597 TGGTATCAATATTTGTCTTTCACACAAAATCCAAATCTTAGACTCCTCTATTCAAACTGG 656
||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 618 TGGCATCAACATTTGTCTTTCACACAGAATCCAAATCTTAGACTCCTCTATTCAAACTGG 677
Query 657 TGATGATTGTGTTGCAATTACTGGTGGAAGGGGTGGTTCTTCAGATATCAACATTACTGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TGATGATTGTGTTGCAATTACTGGTGGAAGGGGTGGTTCTTCAGATATCAACATTACTGG 737
Query 717 TGTGGCATGTGGTCCGGGCCACGGTATCAGTATTGGGAGTTTGGGGAAAGATGATGAGAC 776
||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 738 TGTAGCATGTGGTCCGGGTCACGGTATCAGTATTGGGAGTTTGGGGAAAGATAATGAGAG 797
Query 777 AGATGACATAGTCGAAAACGTGATCGTAAGAAGCTGTAGTTTTACTGGAACTCAAAATGG 836
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 798 AGATGACATAGTCGAAAACGTGAACGTAAGAAGCTGTAGTTTTACAGGAACTCAAAATGG 857
Query 837 AGCAAGAATCAAGACTTGGCAA-GGAGGACAAGGGTTGGCCAAAAATATTTTGTATGAAA 895
||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 858 AGCAAGAATCAAGACTTGG-AATGGAGGACGAGGGTTGGCCAAAAATATTTTGTATGAAA 916
Query 896 ATATTACATTGATAGATGCTGGATACCCCATTATCATCAATCAACATTATTTTGACAA 953
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 917 ATATTACATTGATAGATGCTGGATACCCCATCATCATCAATCAACACTATTTTGACAA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5