BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888904

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32100.1 | Symbols:  | Beta-1,3-N-Acetylglucosaminyltransfer...   403    5e-112


> AT4G32100.1 | Symbols:  | Beta-1,3-N-Acetylglucosaminyltransferase 
family protein | chr4:15511757-15512218 REVERSE LENGTH=369
Length=369

 Score =  403 bits (218),  Expect = 5e-112
 Identities = 278/308 (90%), Gaps = 0/308 (0%)
 Strand=Plus/Plus

Query  17   GGTATGGGGATGATTTTTATTCTCTCAAGAGCCTATTTGTGAGACAATGGAAAACCGGAA  76
            ||||||||||||||| |||||||||| ||||| ||| ||||| ||||| ||| ||||| |
Sbjct  62   GGTATGGGGATGATTCTTATTCTCTCGAGAGCTTATCTGTGATACAATCGAAGACCGGGA  121

Query  77   AAATGGTTAATAACAAACCGGAGTGGGAAGTGAAAGTGCTGAATTCTAGTCCCTGCTATT  136
            | |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  ACATGGTTGAGAACAAACCGGAGTGGGAAGTGAAAGTGCTGAATTCTAGTCCCTGCTATT  181

Query  137  TCACTGATACAAAGTTGTCTTGTGTCGGTTTCCAATCGGACACACCCATCGACAGTAAGG  196
            ||||| | |||| |||||| |||||| ||||| |||||| ||||||||||||||||||||
Sbjct  182  TCACTCACACAACGTTGTCATGTGTCCGTTTCAAATCGGTCACACCCATCGACAGTAAGG  241

Query  197  TGATATCAAAATCCGGTGACACGTGTCTCCTCGCCAACGGTGACGCTATCCATGATTTCA  256
            |  |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||| |||
Sbjct  242  TTCTATCTAAATCCGGTGACACGTGTCTCCTCGGCAACGGCGACTCTATCCATGATATCA  301

Query  257  GTTTCAAATACGTATGGGATACAAGCTTCGACCTCAAGGTCATCGACGGCCAAATCGCTT  316
            ||||||||||||||||||| ||||||||||||||||||||  |||||||| | |||||||
Sbjct  302  GTTTCAAATACGTATGGGACACAAGCTTCGACCTCAAGGTTGTCGACGGCTACATCGCTT  361

Query  317  GCTCTTAA  324
            ||||||||
Sbjct  362  GCTCTTAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5