BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888917
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31980.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3049 0.0
AT2G25190.1 | Symbols: | PPPDE putative thiol peptidase family... 433 4e-120
> AT4G31980.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158),
Protein of unknown function DUF862, eukaryotic
(InterPro:IPR008580); BEST Arabidopsis thaliana protein match
is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1);
Has 1967 Blast hits to 1844 proteins in 183 species:
Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants
- 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI
BLink). | chr4:15464905-15469204 FORWARD LENGTH=2043
Length=2043
Score = 3049 bits (1651), Expect = 0.0
Identities = 1921/2050 (94%), Gaps = 23/2050 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTGTC-GAAACGTCTCGGTGAGGCGGAAGAAGAAATCTGGTTCGGTTCCGGTTTA 59
|||||||| | ||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1 ATGTTTTG-CAGAAACGTATCGGTGAGGCGGAAGAAGAATTCTGGTACGGTACCGGTTTA 59
Query 60 TCTGAATGTGTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGAATGTTTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119
Query 120 CTATCACTCTGGTCTTGAAGTTCATGGGGTTGAATATGGATACGGGGCACACGAGCATTC 179
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 120 CTATCACTCTGGTCTCGAAGTTCATGGGGTTGAGTATGGATACGGGGCACACGAGAAATC 179
Query 180 GAGCTCGGGAATCTTTGAAGTTGAGCCAAAGAAGTGTCCTGGTTTCACGTTCAGGAAATC 239
||||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 180 GAGCTCGGGGATTTTTGAGGTGGAGCCAAAGAAGTGTCCTGGTTTCACATTCAGGAAATC 239
Query 240 GATTCTTGTGGGTGAAACAGAGATGAGGGCTAAAGAAGTTAGAACCTTTATGGAGAAATT 299
||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 240 GATTCTTGTTGGTGAAACAGAGATGAAGGCTAAAGAAGTTCGAAGCTTTATGGAGAAATT 299
Query 300 ATCAGAAGAGTATCAGGGAAACAAATACCATCTCATCACAAGGAACTGCAACCATTTCTG 359
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 ATCAGAAGAGTATCAGGGTAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTCTG 359
Query 360 CAACCATGTTTGTTTGAAACTAACTCA-AAACTCAATCCCTAGTTGGGTCAACCGTCTTG 418
||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 360 CAACCATGTTTCTTTGAAACTTACTCACAAA-TCAATCCCTAGTTGGGTCAACCGTCTTG 418
Query 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTGTTGCCGGCTTGCTTGAACGAGACTaaagtga 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTCTTGCCGGCTTGCTTGAACGAGACTAAAGTGA 478
Query 479 agagggtaggaaaagacgggaa---gctcttggaaggagaaagtaagaagaag-agaa-a 533
|| ||||||||||||||||||| ||||||||||||||||| || ||||||| |||| |
Sbjct 479 AGCGGGTAGGAAAAGACGGGAAGCTGCTCTTGGAAGGAGAAAATACGAAGAAGAAGAAGA 538
Query 534 -gaagaag-aaa-gcg-agaagCCGATCAGGTCCGTTATCTTCGTCTTCTTCAAATTCAA 589
||||||| ||| || ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 539 GGAAGAAGAAAATACGAAGAAGCCGATCAGGTCCTTTATCTTCGTCTTCTTCAAATGCAA 598
Query 590 GGTTAGATAATAATCCTACACATAACAGATCAAAATCAACGGGTAATCCTCCTCTTTCTT 649
| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 GATTAGATAATACTCCTACACATAACAGATCAATATCAACGGGTAATCCTCCTCTTTCTG 658
Query 650 CTTCTCCGTCTTGTCCAATGAGACCTCGAGTTCCTTGTGTTGCATCTGGAGCTCAAGATC 709
||||||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 659 CTTCTCCATCTTGTCCTTTGAGACCTCGACTTCCTTCTGTTGCATCTGGAGCTGAAGATC 718
Query 710 AGAAGCCTCCAAGCCATATTA-AT-AATGCCAGCTTCTGCAGTGAAGTGCAATGTCA-CG 766
| || |||||||| || | || | || ||||||||||||||||||||||||||||| ||
Sbjct 719 AAAATCCTCCAAG-CAGA-TACCTCAACGCCAGCTTCTGCAGTGAAGTGCAATGTCACCG 776
Query 767 TGCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTAGATTCCA 826
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 -GCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTCGATTCCA 835
Query 827 TCAAAGCAAAGTTAGACTTTTTGTCATCTCTTTCAACCAAATGCTGTATATACAAGGTAC 886
||||||| ||||||| |||||| || |||||||| |||||||||||||||||||||||||
Sbjct 836 TCAAAGCGAAGTTAGCCTTTTTATCTTCTCTTTCCACCAAATGCTGTATATACAAGGTAC 895
Query 887 CTAATAAGCTCCGTAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 946
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTAATAAGCTCCGCAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 955
Query 947 CGCTACATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCATAAATACAGGTATTTGC 1006
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 CGCTTCATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCAGAAATACAGGTATTTGC 1015
Query 1007 AGAGTTTTATCCCTAGAACAAACTCTAGTCTAGAGGACCTTGTTAGAGTTGCTAGGACTT 1066
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TGAGTTTTATCCCTAGAACGAACTCTAGTCTAGAGGACCTTGTTAGACTTGCTAGGACTT 1075
Query 1067 GGGAACAAAATGCTCGCAGCTGTTACGCAGAAGATGTGAAACTTAATAGCGATGAGTTTG 1126
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1076 GGGAACAAAATGCTCGCAGCTGTTATGCAGAAGATGTGAAACTTCATAGCGATGAGTTTG 1135
Query 1127 TT-ATGATGTTAGTTGTAGATGGTAGCTTCCTGGTTGAACTTCTTTTGAGGTCTCATTAT 1185
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 TTGA-GATGTTAGTTGTAGATGGTAGCTTCTTGGTTGAACTTCTTTTGAGGTCTCATTAT 1194
Query 1186 CCTCGGCTTAGAGGCGAGAATGATCGGATATTTGGGAATTCAATGATTATCACTGACGTG 1245
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1195 CCTCGACTTAGAGGCGAGAATGATCGCATATTTGGCAATTCAATGATGATCACCGACGTG 1254
Query 1246 TGCCGTGACATGATTTTGATCGAAAATCAGTTACCCTTTTTCGTTCTAAAGGAGATATTT 1305
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 1255 TGCCGTGACATGATTTTGATAGAAAATCAGTTACCCTTTTTCGTTGTGAAGGAGATATTT 1314
Query 1306 CTTCTCTTGTT-TATATACTACCAACAAGGAACACCTTCAATCACACAGCTAGCGCAACG 1364
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1315 CTTCTCTTGTTGAAT-TACTACCAACAAGGAACACCTTCAATCATACAGCTCGCGCAACG 1373
Query 1365 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTTCAGAGCCAGAACA 1424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1374 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTACAGAGCCAGAACA 1433
Query 1425 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACTGGTTCCAATTAGATTGGAATACAC 1484
||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||
Sbjct 1434 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACAGTTTCCAATTAAATTAGAATACAC 1493
Query 1485 TACATTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TACAGTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1553
Query 1545 CAAGCCAGCAGAGAGCACTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1604
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CAAGCCAGCAGAGACCAGTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1613
Query 1605 GATTCCAACCATTGTCGTCGATGATCTCACGGAGTCCCTCTACAGAAACATCATTGTGTA 1664
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1614 GATTCCAACCATTGTCGTCGATGATCTCACGGAATCCCTCTACAAAAACATCATTGGGTT 1673
Query 1665 TGAACAATGTCATTGCTCAAATAAGAACTTCCTCCACTACACCACACTGCTCGGTTGCTT 1724
||||||||||| |||||||||||| ||||||||| |||||| || ||||||||||||||
Sbjct 1674 TGAACAATGTCGTTGCTCAAATAAAAACTTCCTCGACTACATCATGCTGCTCGGTTGCTT 1733
Query 1725 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCGCAGTGGGATCATCGTGAACCATCT 1784
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 1734 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCACAGTGGGATCATCGTAAACTATCT 1793
Query 1785 GGGGAACTCAGTAGATGTTTCGAAGTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1844
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1794 CGGGAACTCAGTAGATGTTTCAAACTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1853
Query 1845 CAGAAGATTCTACTTTTCGACACTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1904
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1854 CAGAAGATTCTACTTTTCGATGCTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1913
Query 1905 GAATAGGTGGAAGGCAATTCTGAGACGTGACTACTTCCACAATCCTTGGTCAGTTGCTTC 1964
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1914 GAACAGGTGGAAGGCGATTCTGAGACGTGACTACTTCCACAATCCTTGGGCAGTTGCTTC 1973
Query 1965 TGTGTTTGCTGCTTTACTTCTTCTCCTTCTCGCTTTCATTCAGGCTGTATGCTCTATCTT 2024
||| ||||| ||||||||||||||||||||| ||||||| ||| | ||||||||||||||
Sbjct 1974 TGTTTTTGCAGCTTTACTTCTTCTCCTTCTCACTTTCATACAGTCCGTATGCTCTATCTT 2033
Query 2025 GGCTTTGTAA 2034
|||| |||||
Sbjct 2034 GGCTCTGTAA 2043
> AT2G25190.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr2:10733946-10735699 FORWARD LENGTH=1237
Length=1237
Score = 433 bits (234), Expect = 4e-120
Identities = 527/662 (80%), Gaps = 45/662 (7%)
Strand=Plus/Plus
Query 18 CTCGGTGAGGCGGAAGAAGAAATCTGGTTCGGTTCCGGTTTATCTGAATGTGTACGATCT 77
|||||| | |||||||||| |||| ||||| |||||||||||||||||||| ||||||||
Sbjct 259 CTCGGTTAAGCGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAATGTCTACGATCT 318
Query 78 TACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGG-GATCTATCACTCTGGTCTTG 136
|| || ||||||| ||||||||| ||||| ||| |||| | | | ||| |||||| |||
Sbjct 319 AACTCCTATGAATGCTTATGGTTATTGGCTTGGACTTGGTG-TTTTTCATTCTGGTGTTG 377
Query 137 AAGTTCATGGGGTTGAATATGGATACGGGGCACACG-AGCATTCGAGCTCGGGAATCTTT 195
|||||||||| |||||||||| || || ||||| | | || || ||| | || || |||
Sbjct 378 AAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAATCA-TCAAGCACAGGTATTTTT 436
Query 196 GAAGTTGAGCCAAAGAAGTGTCCTGGTTTCACGTTCAGGAAATCGATTCTTGTGGGTG-A 254
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 437 GAAGTGGAACCAAAGAAGTGTCCTGGTTTCACGTTTAGGAAATCGATTCTTGTGGG-GAA 495
Query 255 AACAGAGATGAG-GGCTAAAGAAGTTAGAACCTTTATGGAGAAATTATCAGAAGAGTATC 313
||| || || | || ||||||||| | ||||||||||||||| | ||||||||||
Sbjct 496 AACCGACTTG-GTTGCGAAAGAAGTTCGTGTTTTTATGGAGAAATTAGCTGAAGAGTATC 554
Query 314 AGGGAAACAAATACCATCTCATCACAAGGAACTGCAACCATTTCTGCAACCATGTTTGT- 372
| |||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 555 AAGGAAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTTTGCAATGAAGTTTGTC 614
Query 373 TTGAAACTAACTCA-AAACTCAATCCCTAGTTGGGTCAACCGTCTTGCTCGCTTAGGT-T 430
|| ||||| |||| ||| ||||||||||| ||||| || || |||||||||||||| |
Sbjct 615 TT-AAACTTGCTCAGAAA-TCAATCCCTAGATGGGTGAATCGACTTGCTCGCTTAGGGGT 672
Query 431 TCCTCTGCAACTGTGTGTTGCCGGCTTGCTTGAACGAGACTaaagtgaagagg-gtagga 489
|| |||||||||||||||| || || | ||||||||| | ||||||| || | ||||||
Sbjct 673 TC-TCTGCAACTGTGTGTTACCACCTCGTTTGAACGAGGCAAAAGTGA-GACGAGTAGGA 730
Query 490 aaagacgggaagctcttggaaggagaaagtaagaagaagagaaagaagaagaaagcgaga 549
|||| | || ||| || | | | || || ||||||||| || ||||| | |||
Sbjct 731 AAAG--GAGA-GCT-TTCG--G-A-AA-GTGAGAAGAAGA-AACTAAGAA-AC--CGATC 777
Query 550 agCCGATCAGGTCCGTTATCT-TCGTCTTCTTCAAATTCAAGGTTA---GATAATAATCC 605
| | |||||| ||| ||| || || |||||| | |||| | | |||||| |||
Sbjct 778 A-C-GATCAGATCCTTTA-CTGTCTTCTTCTCCGTCTTCATCGACACCTGATAATCATCG 834
Query 606 T--ACACATAACAGATCAAAATCAACG-GGTAATCCTCCT-CTT-T-CTTCTTCTCCGTC 659
| |||||| | || ||||||||| | ||||||| |||| ||| | |||||||| ||||
Sbjct 835 TTCACACATT-C-GAGCAAAATCAA-GTGGTAATCATCCTTCTTCTTCTTCTTCTTCGTC 891
Query 660 TT 661
||
Sbjct 892 TT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100802694360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5