BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg888921 Length=1653 Score E Sequences producing significant alignments: (Bits) Value AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | ch... 2311 0.0 AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | ch... 148 1e-34 AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:253... 80.5 5e-14 > AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | chr4:15444117-15446959 REVERSE LENGTH=2025 Length=2025 Score = 2311 bits (1251), Expect = 0.0 Identities = 1537/1672 (92%), Gaps = 32/1672 (2%) Strand=Plus/Plus Query 1 ATGACTTTGGAACAAGAAATTGAAGTCTTGGACCAGTTTCCTGTGGGGATGAGAGTTCTT 60 |||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 194 ATGACTATGGAGCAAGAAATTGAAGTCTTGGACCAGTTTCCGGTTGGGATGAGAGTTCTT 253 Query 61 GCTGTTGACGATGACCAGACTTGTCTCCGAATTCTCCAGACTTTGCTTCATCGCTGCCAA 120 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 254 GCTGTTGACGATGACCAGACTTGTCTCCGTATTCTCCAGACTTTGCTTCAGCGCTGCCAA 313 Query 121 TATCACGTTACAACAACGAACCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 314 TATCACGTTACAACAACGAATCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 373 Query 181 AACAAATTTGATCTTGTTATTAGCGATGTTGACATGCCAGACATGGATGGTTTCAAGCTG 240 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 374 AATAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCAGACATGGATGGTTTCAAGCTG 433 Query 241 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCACAGCGAT 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 434 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCATAGCGAT 493 Query 301 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGCGACTATCTGCTTAAGCCGGTT 360 |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct 494 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTT 553 Query 361 CGAATTGAGGAGCTCAAGAACATATGGCAACACGTGGTGAGAAAGAGCAAACTTAAGAAG 420 |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 554 CGAATTGAGGAGCTTAAGAACATATGGCAACATGTTGTGAGAAAGAGCAAACTTAAGAAG 613 Query 421 AACAAGAGCAGTGTGAGTAATGCTGC-GGCAAATTCTGATAAAGCAAACAGAAAACGTAA 479 || ||||||| ||||||||||| | | || ||| | |||||||||||||||||||||||| Sbjct 614 AATAAGAGCAATGTGAGTAATGGTTCAGG-AAACTGTGATAAAGCAAACAGAAAACGTAA 672 Query 480 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGAAAACGATGATCCAACGGC 539 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 673 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGATAATGATGATCCAACGGC 732 Query 540 ACAAAAGAAACCTCGTGTTCTTTGGACGCATGAGCTGCACAACAAATTCCTAGCAGCTGT 599 || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 733 GCAGAAGAAGCCTCGTGTTCTTTGGACGCATGAGCTGCACAATAAATTCCTAGCAGCTGT 792 Query 600 TGATCATTTGGGAGTTGAGAAAGCTGTACCAAAAAAGATTCTTGATCTGATGAATGTTGA 659 ||||||||| || ||||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 793 TGATCATTTAGGCGTTGAGAGAGCTGTTCCAAAAAAGATTCTAGATCTGATGAATGTTGA 852 Query 660 CAAACTCACTAGAGAAAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTTTGAAAAA 719 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 853 CAAACTCACTAGAGAGAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTCTGAAGAA 912 Query 720 GATGTCTGATAAAGCCAATCAACAAGCTACCAGGGCGGCGCTTGAGTCACATTTGATGCA 779 | |||||||| | |||| ||||||||||| ||||||||| |||| |||||||| ||||| Sbjct 913 GGTGTCTGATGACGCCATTCAACAAGCTAACAGGGCGGCTATTGACTCACATTTTATGCA 972 Query 780 AATGAGTTCTCACAAAGGACTTGGCGGCTTCTACCACCACC---GTGGAATACCTGTTGG 836 ||||| |||||| ||||||||||| |||||||||||||||| | |||||||||||||| Sbjct 973 AATGAATTCTCAGAAAGGACTTGGTGGCTTCTACCACCACCACCGCGGAATACCTGTTGG 1032 Query 837 AACCGGTCATTTTCATGGTGGGGCCACAATGATGAGACATTACCCTTCAAATAGGAATCT 896 | ||||||| || |||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct 1033 ATCCGGTCAGTTCCATGGTGGAACCACAATGATGAGGCATTACTCTTCAAATAGGAATCT 1092 Query 897 TGGTCGTCCAAATTCCCTTGCAGGAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 956 |||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1093 TGGTCGTCTGAATTCCCTTGGAGCAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 1152 Query 957 TAACCACAATGATGGAGGAAACATACTTCAGGGATTGCCACTTCCGCCACTAGAAGAGCT 1016 |||||| |||||||||||||||||||||||||| ||||| || |||||||||| Sbjct 1153 TAACCATAATGATGGAGGAAACATACTTCAGGGTTTGCC------GC---TAGAAGAGCT 1203 Query 1017 TCAGATCAACAACAACATCAACAAGGCCTTTCCAAGCTTTACCTCACAACAAAATTC-CC 1075 ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || || Sbjct 1204 TCAGATCAACAACAACATCAACAGGGCTTTTCCAAGCTTTACTTCACAACAAAACTCTCC 1263 Query 1076 TAATGGTTGCTCCCAATAATCTCTTACTTCTCGAGGGTCACCCGCAGTCATCATCG---C 1132 |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||| | Sbjct 1264 -AATGGTAGCTCCCAGTAATCTGTTACTTCTCGAGGGTAACCCGCAGTCATCATCTTTAC 1322 Query 1133 C---------GGGATTTTCTCCTCACTTT-GAGATGAACAAGCGTCAAGAACATTGGTCA 1182 | ||| ||||||||||| ||| ||||| | |||||||| ||||||||||||| Sbjct 1323 CCTCAAACCCGGGTTTTTCTCCTCA-TTTCGAGATCAGCAAGCGTCTAGAACATTGGTCA 1381 Query 1183 AACACTGCATTTTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACAACTTG 1242 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1382 AACGCTGCATTGTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACACCTTG 1441 Query 1243 GAATGGAATGCGTTCTGCGACTCAGCCAGTCCGATAATAAACCAAAACCTGGATACAGAT 1302 |||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| || Sbjct 1442 GAATGGAATGCGTTCTGCGACTCAGCTAGTCCGCTAGTAAACCCAAACCTGGATACAAAT 1501 Query 1303 ACGACATCTTTCTGCAGAAACACGGATTTCAGATCCACAAGTGCTGCACAAACAGACTTC 1362 || ||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||| Sbjct 1502 CCGGCATCTCTCTGCAGAAACACGGGTTTTGGATCCACAAATGCTGCACAAACAGACTTC 1561 Query 1363 TTTTATCCACTACAGATGAATCAGCAGCCTACAAACAACTCAGGTCCAATGACAGAAGCT 1422 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1562 TTTTATCCATTACAGATGAATCAGCAGCCTGCAAACAACTCAGGTCCAGTGACAGAAGCT 1621 Query 1423 CAATTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTACAG 1482 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1622 CAACTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTTCAG 1681 Query 1483 AGTGGTTTCATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGACA 1542 |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1682 AGTGGTTTGATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAATTCCTTAATGACA 1741 Query 1543 CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1602 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1742 CAGGAACAGAGCCAATCTGATTTCTCGGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1801 Query 1603 TCTGAACATGCATATGAGAAAC-CCTATTTTCCCTTTTCTTTGTCAGCTTGA 1653 || ||||||||||| ||||||| || |||||||||||||||||||||||||| Sbjct 1802 TCGGAACATGCATACGAGAAACTCC-ATTTTCCCTTTTCTTTGTCAGCTTGA 1852 > AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | chr2:10724301-10726961 REVERSE LENGTH=1980 Length=1980 Score = 148 bits (80), Expect = 1e-34 Identities = 167/207 (81%), Gaps = 13/207 (6%) Strand=Plus/Plus Query 1427 TGTTTAGAAGTAGCAATCC-AAACGAAGGTTTAC-TCATGGGACAACAGAAGCTACAGAG 1484 |||| || ||||| || || ||| ||||| || | || | || ||||||||| ||||||| Sbjct 1595 TGTTGAGTAGTAGTAACCCGAAA-GAAGGGTT-CGTCGTAGGCCAACAGAAGTTACAGAG 1652 Query 1485 TGGT---TTCATGGCTT-CTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGA 1540 |||| ||||||| || | |||||||||||||||||||||||||||||||| |||| Sbjct 1653 TGGTGGATTCATGG-TTGCAGATGCTGGTTCCTTAGATGATATAGTCAACTCCACGATGA 1711 Query 1541 CA-CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATT-GGGATTTGGATGGTTTAGC 1598 | |||||||||| ||| ||||| || | ||| |||| ||||| |||| ||||||| Sbjct 1712 -AGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAGATTTGGGATATGGAGGGTTTAGT 1770 Query 1599 TCACTCTGAACATGCATATGAGA-AAC 1624 |||||| |||||||||||||||| ||| Sbjct 1771 TCACTCAGAACATGCATATGAGAGAAC 1797 > AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:25376751-25379144 REVERSE LENGTH=2048 Length=2048 Score = 80.5 bits (43), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 6/85 (7%) Strand=Plus/Plus Query 619 AAAGCT-GTACCAAAAAAGATTCTT-GATCTGATGAATGTTGACA-AACTCACTAGAGAA 675 |||||| || || || |||| | || ||||| ||||||||| || |||||||||||| Sbjct 891 AAAGCTGGT-CCCAAGAAGA-TATTGGATCTCATGAATGTT-CCATGGCTCACTAGAGAA 947 Query 676 AATGTTGCAAGCCACCTTCAGAAAT 700 ||||||||||||||||||||||||| Sbjct 948 AATGTTGCAAGCCACCTTCAGAAAT 972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81676286715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5