BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888921
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 | ch... 2311 0.0
AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | ch... 148 1e-34
AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:253... 80.5 5e-14
> AT4G31920.1 | Symbols: ARR10, RR10 | response regulator 10 |
chr4:15444117-15446959 REVERSE LENGTH=2025
Length=2025
Score = 2311 bits (1251), Expect = 0.0
Identities = 1537/1672 (92%), Gaps = 32/1672 (2%)
Strand=Plus/Plus
Query 1 ATGACTTTGGAACAAGAAATTGAAGTCTTGGACCAGTTTCCTGTGGGGATGAGAGTTCTT 60
|||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 194 ATGACTATGGAGCAAGAAATTGAAGTCTTGGACCAGTTTCCGGTTGGGATGAGAGTTCTT 253
Query 61 GCTGTTGACGATGACCAGACTTGTCTCCGAATTCTCCAGACTTTGCTTCATCGCTGCCAA 120
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 254 GCTGTTGACGATGACCAGACTTGTCTCCGTATTCTCCAGACTTTGCTTCAGCGCTGCCAA 313
Query 121 TATCACGTTACAACAACGAACCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 314 TATCACGTTACAACAACGAATCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 373
Query 181 AACAAATTTGATCTTGTTATTAGCGATGTTGACATGCCAGACATGGATGGTTTCAAGCTG 240
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 374 AATAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCAGACATGGATGGTTTCAAGCTG 433
Query 241 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCACAGCGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 434 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCATAGCGAT 493
Query 301 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGCGACTATCTGCTTAAGCCGGTT 360
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 494 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTT 553
Query 361 CGAATTGAGGAGCTCAAGAACATATGGCAACACGTGGTGAGAAAGAGCAAACTTAAGAAG 420
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 554 CGAATTGAGGAGCTTAAGAACATATGGCAACATGTTGTGAGAAAGAGCAAACTTAAGAAG 613
Query 421 AACAAGAGCAGTGTGAGTAATGCTGC-GGCAAATTCTGATAAAGCAAACAGAAAACGTAA 479
|| ||||||| ||||||||||| | | || ||| | ||||||||||||||||||||||||
Sbjct 614 AATAAGAGCAATGTGAGTAATGGTTCAGG-AAACTGTGATAAAGCAAACAGAAAACGTAA 672
Query 480 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGAAAACGATGATCCAACGGC 539
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 673 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGATAATGATGATCCAACGGC 732
Query 540 ACAAAAGAAACCTCGTGTTCTTTGGACGCATGAGCTGCACAACAAATTCCTAGCAGCTGT 599
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 733 GCAGAAGAAGCCTCGTGTTCTTTGGACGCATGAGCTGCACAATAAATTCCTAGCAGCTGT 792
Query 600 TGATCATTTGGGAGTTGAGAAAGCTGTACCAAAAAAGATTCTTGATCTGATGAATGTTGA 659
||||||||| || ||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 793 TGATCATTTAGGCGTTGAGAGAGCTGTTCCAAAAAAGATTCTAGATCTGATGAATGTTGA 852
Query 660 CAAACTCACTAGAGAAAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTTTGAAAAA 719
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 853 CAAACTCACTAGAGAGAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTCTGAAGAA 912
Query 720 GATGTCTGATAAAGCCAATCAACAAGCTACCAGGGCGGCGCTTGAGTCACATTTGATGCA 779
| |||||||| | |||| ||||||||||| ||||||||| |||| |||||||| |||||
Sbjct 913 GGTGTCTGATGACGCCATTCAACAAGCTAACAGGGCGGCTATTGACTCACATTTTATGCA 972
Query 780 AATGAGTTCTCACAAAGGACTTGGCGGCTTCTACCACCACC---GTGGAATACCTGTTGG 836
||||| |||||| ||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 973 AATGAATTCTCAGAAAGGACTTGGTGGCTTCTACCACCACCACCGCGGAATACCTGTTGG 1032
Query 837 AACCGGTCATTTTCATGGTGGGGCCACAATGATGAGACATTACCCTTCAAATAGGAATCT 896
| ||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 1033 ATCCGGTCAGTTCCATGGTGGAACCACAATGATGAGGCATTACTCTTCAAATAGGAATCT 1092
Query 897 TGGTCGTCCAAATTCCCTTGCAGGAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 956
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGGTCGTCTGAATTCCCTTGGAGCAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 1152
Query 957 TAACCACAATGATGGAGGAAACATACTTCAGGGATTGCCACTTCCGCCACTAGAAGAGCT 1016
|||||| |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1153 TAACCATAATGATGGAGGAAACATACTTCAGGGTTTGCC------GC---TAGAAGAGCT 1203
Query 1017 TCAGATCAACAACAACATCAACAAGGCCTTTCCAAGCTTTACCTCACAACAAAATTC-CC 1075
||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || ||
Sbjct 1204 TCAGATCAACAACAACATCAACAGGGCTTTTCCAAGCTTTACTTCACAACAAAACTCTCC 1263
Query 1076 TAATGGTTGCTCCCAATAATCTCTTACTTCTCGAGGGTCACCCGCAGTCATCATCG---C 1132
|||||| ||||||| |||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1264 -AATGGTAGCTCCCAGTAATCTGTTACTTCTCGAGGGTAACCCGCAGTCATCATCTTTAC 1322
Query 1133 C---------GGGATTTTCTCCTCACTTT-GAGATGAACAAGCGTCAAGAACATTGGTCA 1182
| ||| ||||||||||| ||| ||||| | |||||||| |||||||||||||
Sbjct 1323 CCTCAAACCCGGGTTTTTCTCCTCA-TTTCGAGATCAGCAAGCGTCTAGAACATTGGTCA 1381
Query 1183 AACACTGCATTTTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACAACTTG 1242
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1382 AACGCTGCATTGTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACACCTTG 1441
Query 1243 GAATGGAATGCGTTCTGCGACTCAGCCAGTCCGATAATAAACCAAAACCTGGATACAGAT 1302
|||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| ||
Sbjct 1442 GAATGGAATGCGTTCTGCGACTCAGCTAGTCCGCTAGTAAACCCAAACCTGGATACAAAT 1501
Query 1303 ACGACATCTTTCTGCAGAAACACGGATTTCAGATCCACAAGTGCTGCACAAACAGACTTC 1362
|| ||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 1502 CCGGCATCTCTCTGCAGAAACACGGGTTTTGGATCCACAAATGCTGCACAAACAGACTTC 1561
Query 1363 TTTTATCCACTACAGATGAATCAGCAGCCTACAAACAACTCAGGTCCAATGACAGAAGCT 1422
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1562 TTTTATCCATTACAGATGAATCAGCAGCCTGCAAACAACTCAGGTCCAGTGACAGAAGCT 1621
Query 1423 CAATTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTACAG 1482
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1622 CAACTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTTCAG 1681
Query 1483 AGTGGTTTCATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGACA 1542
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1682 AGTGGTTTGATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAATTCCTTAATGACA 1741
Query 1543 CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1602
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1742 CAGGAACAGAGCCAATCTGATTTCTCGGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1801
Query 1603 TCTGAACATGCATATGAGAAAC-CCTATTTTCCCTTTTCTTTGTCAGCTTGA 1653
|| ||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1802 TCGGAACATGCATACGAGAAACTCC-ATTTTCCCTTTTCTTTGTCAGCTTGA 1852
> AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 |
chr2:10724301-10726961 REVERSE LENGTH=1980
Length=1980
Score = 148 bits (80), Expect = 1e-34
Identities = 167/207 (81%), Gaps = 13/207 (6%)
Strand=Plus/Plus
Query 1427 TGTTTAGAAGTAGCAATCC-AAACGAAGGTTTAC-TCATGGGACAACAGAAGCTACAGAG 1484
|||| || ||||| || || ||| ||||| || | || | || ||||||||| |||||||
Sbjct 1595 TGTTGAGTAGTAGTAACCCGAAA-GAAGGGTT-CGTCGTAGGCCAACAGAAGTTACAGAG 1652
Query 1485 TGGT---TTCATGGCTT-CTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGA 1540
|||| ||||||| || | |||||||||||||||||||||||||||||||| ||||
Sbjct 1653 TGGTGGATTCATGG-TTGCAGATGCTGGTTCCTTAGATGATATAGTCAACTCCACGATGA 1711
Query 1541 CA-CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATT-GGGATTTGGATGGTTTAGC 1598
| |||||||||| ||| ||||| || | ||| |||| ||||| |||| |||||||
Sbjct 1712 -AGCAGGAACAGAGCCAGGGAGATTTGTCTGGAGGAGATTTGGGATATGGAGGGTTTAGT 1770
Query 1599 TCACTCTGAACATGCATATGAGA-AAC 1624
|||||| |||||||||||||||| |||
Sbjct 1771 TCACTCAGAACATGCATATGAGAGAAC 1797
> AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:25376751-25379144
REVERSE LENGTH=2048
Length=2048
Score = 80.5 bits (43), Expect = 5e-14
Identities = 72/85 (85%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 619 AAAGCT-GTACCAAAAAAGATTCTT-GATCTGATGAATGTTGACA-AACTCACTAGAGAA 675
|||||| || || || |||| | || ||||| ||||||||| || ||||||||||||
Sbjct 891 AAAGCTGGT-CCCAAGAAGA-TATTGGATCTCATGAATGTT-CCATGGCTCACTAGAGAA 947
Query 676 AATGTTGCAAGCCACCTTCAGAAAT 700
|||||||||||||||||||||||||
Sbjct 948 AATGTTGCAAGCCACCTTCAGAAAT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5