BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888924

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c...   723    0.0  


> AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | 
chr4:13753210-13754745 REVERSE LENGTH=1050
Length=1050

 Score =  723 bits (391),  Expect = 0.0
 Identities = 514/570 (90%), Gaps = 21/570 (4%)
 Strand=Plus/Plus

Query  26   GGATAATCGCGGCGACAACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG  85
            |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG  119

Query  86   TCCTCGATCCTGCTTTCGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC  145
            ||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct  120  TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC  179

Query  146  ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG  205
            |||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct  180  ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG  239

Query  206  CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT  261
            |||||||||||||||| ||||||||||      |||||||||||||||||||||||||||
Sbjct  240  CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT  299

Query  262  CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC  321
            |||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  300  CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC  359

Query  322  TCTCCG---ATGATTTTTCCGGAGATATGCCACCGTGGACCACCGGTTTCTTTGGCAATT  378
            ||||||   |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct  360  TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT  419

Query  379  GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-  437
            |||||||||||||||| ||  |||||||||||||||||||||| |||||||||||| || 
Sbjct  420  GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT  478

Query  438  ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTTGTGCACTA  497
            |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct  479  ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTA  538

Query  498  TATCA-A----A-T-GCATTGGTGAGATTGTTAGCAAGCTTAGCCCTTTGGGTGCTATTC  550
            ||||| |    | | ||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct  539  TATCAGATGCCACTTGCATTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTC  598

Query  551  AAATAGTGCAGTGCCA-GATGGAAATTTGA  579
            ||||| |||||||  | | |||||||||||
Sbjct  599  AAATACTGCAGTGATAAG-TGGAAATTTGA  627



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5