BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg888927

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31877.1 | Symbols: MIR156C | MIR156C; miRNA | chr4:15413319...   279    4e-75


> AT4G31877.1 | Symbols: MIR156C | MIR156C; miRNA | chr4:15413319-15415873 
REVERSE LENGTH=857
Length=857

 Score =  279 bits (151),  Expect = 4e-75
 Identities = 168/176 (95%), Gaps = 1/176 (1%)
 Strand=Plus/Plus

Query  1    ATGTTCGATGCATTTGCTTCTCTTGCGTGCTCACTGCTCTATCTGTCAGATTTCGGCTCC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  399  ATGTTCGATGCATTTGCTTCTCTTGCGTGCTCACTGCTCTATCTGTCAGATTCCGGCTCC  458

Query  61   GATTCGGTTCCGTTCACGTTTTCTTCTTCTAATTGTGTTCCAATCTCTCACTTTCTTTCT  120
            |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  459  GATTCGGTCCCGGTCACGTTTTCTTCTTCTAATTGTGTTCCCATCTCTCACTTTCTCTCT  518

Query  121  CATGTGTTCTTCATCTCTCCAAAGGGATGTAATGTTATCTTGGGGTTTTCTTCTGG  176
            ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct  519  CATGTGTTCTTCATCTCTC-AAAGGTATGAAATGTTATCTTGGGGTTTTCTTCTGG  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5