BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888940
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31790.1 | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methy... 1391 0.0
> AT4G31790.1 | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methylases
| chr4:15377211-15379025 FORWARD LENGTH=1452
Length=1452
Score = 1391 bits (753), Expect = 0.0
Identities = 807/834 (97%), Gaps = 0/834 (0%)
Strand=Plus/Plus
Query 1 ATGTTGTATATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ATGTTGTACATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 183
Query 61 GAGGCTGTTAAGAAATCTCAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GAGGCTGTTAAGAAATCACAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 243
Query 121 GGTCTCTCTGCTGATGGTCTTTCCAATCTTGAAAAGTTTTATGGGAAACCAATTATACTT 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 244 GGTCTCTCTGCTGATGGACTTTCCAATCTTGAAAAGTTCTATGGGAAACCAATTATACTT 303
Query 181 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGCTATGATCGAAGAAGCCATTCATAAT 240
|||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||
Sbjct 304 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGATATGATTGATGAAGCCATTGATAAT 363
Query 241 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACACACAGTGATCTTGTT 300
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 364 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACGCATAGTGATCTTGTT 423
Query 301 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 483
Query 361 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCAATCCCGTTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 484 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCGATCCCATTC 543
Query 421 TTTACTGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTTACCGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 603
Query 481 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTA 663
Query 541 TGCAGAGGAGGGAAGAAACAGTATGAACCCCCGAGGTATATGAGTGTTAATACAGCGATC 600
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 664 TGCAGAGGAGGGAAGAAACAGTATGAACCGCCGAGGTATATGAGTGTTAATACAGCAATC 723
Query 601 GAGCAGCTTCTCGAAGTTGAGCAAAAGCACGGAGATTCTGTTTATGGAGAAGACACACAG 660
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 724 GAGCAGCTTCTGGAAGTTGAGCAAAAGCATGGAGATTCTGTTTATGGTGAAGACACACAG 783
Query 661 TGTGTGGGCTTTGCGCGGCTTGGCTCTGAGGACCAAAAAATAGTTGCAGGGACGATGAAG 720
|||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 784 TGTGTGGGCTTTGCCCGGCTTGGCTCTGAGGACCAGACGATAGTTGCAGGGACGATGAAG 843
Query 721 CAACTCGAGAGCGTTGATTTTGGAGCACCATTGCATTGTCTTGTGATAGTAGGCCAGACT 780
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 844 CAACTCGAAAGCGTTGATTTTGGAGCACCGTTGCATTGTCTTGTGATAGTAGGCGAGACT 903
Query 781 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACTAAAGTGGAAACTAA 834
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 904 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACAAAAGTGGAAACTAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5