BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888976
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31430.2 | Symbols: | unknown protein; LOCATED IN: plasma m... 2628 0.0
> AT4G31430.2 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING:
15 growth stages; Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr4:15248456-15252529 FORWARD
LENGTH=2104
Length=2104
Score = 2628 bits (1423), Expect = 0.0
Identities = 1635/1734 (94%), Gaps = 27/1734 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCCGTCTCCGGTTACGCCGCTGGAGCAGGTCAGCCTCGTA-CCGGAGGAAAAAT 59
|||||||||||||||||||||||||| ||||||||||||||||| | ||| || |||||
Sbjct 55 ATGGATTCCGTCTCCGGTTACGCCGCCGGAGCAGGTCAGCCTCG-AGTCGGTGGGAAAAT 113
Query 60 TGTTCGACCACGACGCACCGCCGCCGTCAGGACGCCGTATGACCGCCCCTTTCCGAGATC 119
||||||||||||||||||||| | ||||||||||||| ||| |||||| ||| ||||||
Sbjct 114 TGTTCGACCACGACGCACCGCTGTTGTCAGGACGCCGTGTGAGCGCCCCGTTCAGAGATC 173
Query 120 CCGAGATCCCCCTCAGCAAAACCCTAGTTGGATCTCCAGGCTCGTTTACAAACCCGCCAG 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CCGAGATCCTCCTCAGCAAAACCCTAGTTGGATCTCCAGGCTCGTTTACAAACCCGCCAG 233
Query 180 CGTAATTGCCTCCGGCGCCGGAAAATTCATTTCTTCCGTCGTCTTCTCCGACTCGTCCTC 239
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 234 CGTAATTGCTTCCGGCGCCGGAAAATTCATTTCTTCCGTCGTCTTCTCCGACTCTTCCTC 293
Query 240 ATCTTCGGAGGAGGACGAGGATTCATCTTCAGATATTGATGGTGATGAGGATGTTGAGAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATCTTCGGAGGAGGACGAGGATTCATCTTCAGATATTGATGGTGATGAGGATGTTGAGAA 353
Query 300 GAACATTACCGATTTTACTGAAGAGGACCTTCTGACTGCCCAGCAACCAACCATCCAACG 359
||||| | ||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 354 GAACAATCCCGATTTTACTGAAGAGGACCTTCTGAGTGCCCAGCAACCAAGCATTCAACG 413
Query 360 ACTCAGTTCTAAGCGTGTAATTGAGCAGCTTCTCATGCAAGAAACATTTGCAAGGGAAGA 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 414 ACTCAGTTCTAAGCGTGTAATTGAGCAGCTTCTCTTGCAAGAAACATTTGCAAGGGAAGA 473
Query 420 GGGTGATAGATTAATAGATATCATCAAGGCTAGGGTTGTCGATCATTCTAGTGTCCCCTC 479
||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||||||
Sbjct 474 GGGTGATAGGTTAATAGATATCATCAAGGCTAGGGTTGTAGATCATCCCAGCGTCCCCTC 533
Query 480 TGCTGTTGAGGGGAGGCATAATGACAATGGATTGACAAGTGATGTGAATGTTTGTGAAAT 539
|||| ||||| ||| ||| ||||| ||||||||||||| || |||||||| |||||||
Sbjct 534 TGCTATTGAGACGAGTCATGATGACTATGGATTGACAAGCGACGTGAATGTGGGTGAAAT 593
Query 540 GTCCAATACAACTGTCATGGAAGCAAGAAAATGGTTGGAGGAGAAGAAATCAGGATCAAG 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTCCAATACAGCTGTCATGGAAGCAAGAAAATGGTTGGAGGAGAAGAAATCAGGATCAAG 653
Query 600 TTCAAAGTATACAGCAACTGAAGATGGTGCTGGATCGCCTGTGGACGTGGCCAAGTCTTA 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTCAAAGTATAAAGCAACTGAAGATGGTGCTGGATCGCCTGTGGACGTGGCCAAGTCTTA 713
Query 660 TATGCGAGCTCGTCTGCCATGGGGATCTCCA---GC---------AGAGTTTCGATCACC 707
||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 714 TATGCGAGCTCGTCTGCCATGGGGATCTCCAGCTGCGAATAATTTAGATTTTCGATCACC 773
Query 708 ATCATCAGCAGGAATGCAAGGGACACCCTTTCCTTATAGCGCTGGAAACTTTTCCTCATC 767
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 774 ATCATCAGCAAGAGTGCAAGGGACACCCCTTCCTTATAGCGCTGGAAACTTTTCCTCATC 833
Query 768 TAAGCTGAAAAGGAAGTCCGGTTCTAATCAATCATGGAATATTCAAGATGAAATTCGCAA 827
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 CAAGCTGAAAAGGAAGTCCGGTTCTAATCAGTCATGGAATATTCAAGATGAAATTCGCAA 893
Query 828 AGTCAGAGCTAAAGCAACAGAGGAAATGCTTAAAAGTCCTAGTAGCGTAGCCTCTTTGGA 887
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 894 AGTCAGAGCTAAAGCAACCGAGGAAATGCTTAAAAGTCCCAGTAGTGTAGCCTCTTTGGA 953
Query 888 ACCTAAATACAGCCCCAATGTTTTAGCGACTGATATGCTCAAAGGAAATGCTTCGTCTTT 947
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ACCTAAATACAGCCCCTATGTTTTAGCGACTGATATGCTCAAAGGAAATGCTTCGTCTTT 1013
Query 948 GAATGCTGATGGAGCTGTACGGAATGAACAAAGCAGAGCTCTACCAAATTCAGCCATACC 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAATGCTGATGGAGCTGTACGGAATGAACAAAGCAGAGCTCTACCAAATTCAGCCATACC 1073
Query 1008 TACCTCTGAACACAATCAGACTACGGAAGCTAATCAAGCCGTCGGAGAAACAGGAGTTTT 1067
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1074 TACCTCTGAGCACAATCAGACTACGGAAGCTAATCAAGCCGTCAAAGAAACAGGAGTTTT 1133
Query 1068 ACACACTAGATCTCGTGGAGTTGGTTTGGACGAGACATTTATCTCCACACAAGGAGTCAA 1127
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 ACACACTAGATCTCGTGGAGTTGGTTTGGAGGAGACATTTATCTCCACACAAGGAGTCAA 1193
Query 1128 GCCGTCTGAAGATACGAATATCGCTCCTCAAAGTGGAACCGCTGTAGATGACTTCAATGA 1187
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 GCCATCTGAAGATACGAATACCGCTCCTCAAAGTGGAACTGCTGTAGATGACTTCAATGA 1253
Query 1188 TCAAGATGGCGATTTTATCCAACCTAGCT-CTACTATCGGAATCACCACAAATGCTGTCT 1246
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1254 TCAAGATGGCGATTTTATCCAACCTA-CTTCTACTATCGGAAACACCACAAATGCTGTCT 1312
Query 1247 TGGCTCTTGGGGCAACTTTGGATCCAACTGGGAACTCTTCTTGCATCCCTAAAGATGTGT 1306
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1313 TGGCTCTTGGGGCAACTTTGGATCCTACTGGGAACTCTT---GCATCCCTAAAGATGTGT 1369
Query 1307 ATGAAACATCCAAAGAAGCTGATGAAATAGGCGCATCACGTGC-TACTTCTAACGGTTTC 1365
||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1370 TTGAAACATCAAAAGAAGCTGATGAAATAGGCGCATCACGT-CATACTTCTAACGGTTTC 1428
Query 1366 CCATCTTCATCACCTAGTTCACCAGTGGT---GGAAGGTCAACCTAAACCCACACCACCA 1422
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1429 CCATCTTCATCACCTAGTTCACCAGCGGTTATGGAAGGTCAACCAAAACCCACACCACCA 1488
Query 1423 GAAGAAACCGAGGCTTCTCAGCCTGTAGCTGAAATTCATGGTGATGATATGACAGTAGGG 1482
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1489 GAAGAAACCAAGGCTTCTCAGCCTATAGCTGAAATTCATGGTGATGATATGACAGTAGGG 1548
Query 1483 AATGGCTCAGATGGTGCAATTAATAACGAAAACAATGACAGCCACTCAAGTGGCTCGCAT 1542
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1549 AATGGCTCAGATGGTGCAATTAATAACGAAAGCAATGACAGCCACTCAAGTGCCTC---T 1605
Query 1543 AACAGTTCAAGCACTCATGAAGAAGAGTGGCTCCCAGGAGACCAGTCTCTACCGAACTCA 1602
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1606 AACAGTTCAAGCACCCATGAAGAAGAGTGGCTCCCAGGAGACCAGTCTCTACCTAACTCA 1665
Query 1603 AACTCAGCAAGTAGCAGCCCGGGAACTACCAAGGTCTTGGCATACAGCAGAAGAGGAAGA 1662
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1666 AACTCAGCAAGTAGCAGCCCGGGAAATACCAAGGTCTTGGCATACAGCAGAAGAGGAAGA 1725
Query 1663 GGGCGGGGGAGAGGAAGAGGCCGAGGAGGTCGAGGCAAAGGACGGGCGAAATAA 1716
|| || || |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1726 GGCCGAGGTAGAGGAAGAGGCAGAGGAGGTCGAGGCAAAGGACGGGCCAAATAA 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84838921050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5