BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888992
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31270.1 | Symbols: | sequence-specific DNA binding transcr... 1247 0.0
> AT4G31270.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr4:15183188-15184961 REVERSE LENGTH=1080
Length=1080
Score = 1247 bits (675), Expect = 0.0
Identities = 824/893 (92%), Gaps = 22/893 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGGAACTTCGGGTTCACGGAGAACACGGTCTCAAGTCGCTCCGGATTGGGCA 60
||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 93 ATGGAGGAAGGAACTTCAGGTTCACGGAGAACACGGTCTCAAGTTGCTCCAGAATGGGCA 152
Query 61 GTCAAAGACTGTCTGA-TACTTGTGAATGAGATCGCTGCTGTCGAAGCGGACTGTTCGAA 119
|||||||| ||||| | | || ||||||||||||||||| || ||||| || ||||||||
Sbjct 153 GTCAAAGATTGTCT-AGTCCTCGTGAATGAGATCGCTGCGGTTGAAGCCGATTGTTCGAA 211
Query 120 TGCTTTATCCAGCTTCCAGAAATGGACAATGATCTCAGAGAACTGTAACGCTTTGGATG- 178
||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 212 TGCTTTATCTAGCTTCCAGAAATGGACAATGATCACAGAGAACTGCAACGCTTTGGATGT 271
Query 179 TACGCAGGAATCTAAACCAATGCAGGAGGAAATGGGATTCATTGGTGTCTGATTTCAATC 238
|| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 272 TA-GCAGAAATCTAAACCAATGCAGGAGGAAATGGGATTCTTTGATGTCTGATTACAATC 330
Query 239 AGATCAAGCAGTGGGAATCCCAGTACCGAGGCAGTGGTCGTTCTTATTGGTCCCTGAGTA 298
|||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 331 AGATCAAGAAGTGGGAATCTCAGTACCGAGGCACTGGTCGTTCCTATTGGTCCCTGAGTA 390
Query 299 GTGACAAGAGGAAGTTACTGAATCTCCCGGGGAATATCGATATCGAGCTTTTTGAAGCCA 358
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 391 GTGACAAGAGGAAGTTACTTAATCTCCCGGGGGATATCGATATCGAGCTTTTTGAAGCCA 450
Query 359 TCAGTGCTGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCGG 418
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 451 TCAATGCGGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCTG 510
Query 419 AAGCGCAAGACATTGTTGATGTCACTACTGAATTAGCTTTTGTAGGATCAAAAAGATCAA 478
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 511 AAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGCTTTTGTAGGATCAAAAAGATCAA 570
Query 479 GACAGCGGACAATGGTCATGAAGGAAAACCCCCCACAGAAGACAAAGAAAGAAGAGCCAC 538
||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 571 GACAGCGAACAATGGTCATGAAGGA------------GA---CAAAGAAAGAAGAGCCAC 615
Query 539 GGAAAAGCCGAGTTCAAGTAAACACTCGAGAGAAACATATAACTACAAAAGCAACCCATC 598
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 616 GGACTAGCCGAGTTCAAGTAAACACTCGAGAGAAACCTATAACTACAAAAGCAACCCATC 675
Query 599 AGaaaaaaaCCATGgaagagaagaagccgatggaagatatctccacagatgaagaagaag 658
|||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 676 AGAACAAAACCATGGGAGAGAAGAAGCCGGTGGAAGATATGTCCACAGATGAAGAAGAAG 735
Query 659 aagaggaaACAATGAACATAGAAGAGGAGGTAGAAGTGATGGAAGCGAAGCTAAGTTATA 718
| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 736 ATGA--AA-CAATGAACATAGAAGAGGATGTAGAAGTGATGGAAGCGAAGCTAAGTTATA 792
Query 719 AAATTGACTTGATACATGCGATAGTCGGGAGAAATCTAGCAAAAGATAATGAAACAAGGG 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 793 AAATTGACTTGATACATGCGATAGTCGGGAGAAATCTAGCAAAGGATAATGAAACAAAGG 852
Query 779 ATGGTATTAGTACGGACGACAAGTTGAAGTTTGTGAGACAGCAAGGAGACGAGCTCATCG 838
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 853 ATGGTGTTAGTATGGACGACAAGTTGAAGTCTGTGAGACAGCAAGGAGACGAGCTCATCG 912
Query 839 GTTGTCTGAGTGAAATTGTTAGTACCCTTAATAGGCTTCGTGAAGTTCCACAA 891
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 GTTGTCTGAGTGAAATTGTTAGTACCCTTAATAGGCTTCATGAAGTTCCACAA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5