BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg888994
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31240.1 | Symbols: | protein kinase C-like zinc finger pro... 1879 0.0
> AT4G31240.1 | Symbols: | protein kinase C-like zinc finger protein
| chr4:15176455-15178768 REVERSE LENGTH=1708
Length=1708
Score = 1879 bits (1017), Expect = 0.0
Identities = 1126/1180 (95%), Gaps = 2/1180 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGTATCAACTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTTTACTCTATA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 348 ATGGCAGTATCAGCTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTCTACTCTATA 407
Query 61 CTAGCAGCTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGTGCCGTTGGAATAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTAGCAGCTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGTGCCGTTGGAATAT 467
Query 121 ATTCATGGGAAGACGATTTGTCTCTTCTTCTCTGCAAACTGGTGCAGGCCTTGCAAGGAC 180
|||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 468 ATTCATGGTAAGACGATTTGTCTCTTCTTCTCTGCAATCTGGTGCAGGCCCTGCAAGGAC 527
Query 181 TTCACTCCAGAGCTGGTAAAACTCTACGAAAATCTTCA-AACCCGAGGAGAAGAACTCGA 239
||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 528 TTCACTCCAGAGCTGATAAAACTCTACGAAAATCTTCAGAA-CCGAGGAGAAGAACTCGA 586
Query 240 GATCATCTTTGTCTCATTTGATCATGATATGACTTTATTCTATGAACATTTCTGGTGCAT 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 587 GATCATCTTTGTCTCATTTGATCATGATATGACTTCATTCTATGAACATTTCTGGTGCAT 646
Query 300 GCCATGGCTCGCAGTCCCCTTCAATTTAAACCTACTCAACAAATTAAGGGACAAGTACAG 359
||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 647 GCCATGGCTTGCAGTTCCCTTCAATTTAAGCCTACTCAACAAATTAAGGGACAAGTACGG 706
Query 360 AATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAATCTCAGTCGCTGAAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAATCTCAGTCGCTGAAGA 766
Query 420 TGTAATTGGTCTAATTGAAGACTATGGTCCTGAAGCATTTCCTTTCACTAAAAAGAGAAA 479
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct 767 TGTAATTGGTCTAATTGAAGACTATGGTTCTGAAGCCTTTCCTTTCACTAAAAAGCGAAA 826
Query 480 AGCAGAACTCAAAGCTATCGATGACTCCAAACGCATTGGCGGACAATTGGAGAAACTCCT 539
|| |||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 827 AGAAGAACTCAAAGCCATCGATGACTCCAAACGCCTTGGAGGACAGTTGGAGAAACTCCT 886
Query 540 TACTCATGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGTAAGGTGCTAGTTTCTAA 599
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 887 TACTCACGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGCAAGGTGCTAGTTTCTAA 946
Query 600 ACTAGTGGGCAAGACTATAGGGTTGTACTTTGGTGCCCACTGGTGTCCGCCTTTTCGATC 659
||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 947 ACTTGTGGGAAAGACCATAGGGTTGTACTTTGGTGCACACTGGTGTCCGCCTTTCCGATC 1006
Query 660 TTTCACTTCTCAGCTCCTGGATGTGTACAATGAGCTCGCGACCAGAGATAAAGGCTCCTT 719
|||||||||||| ||| | ||||||||||||||||| ||||| | |||||||||||||||
Sbjct 1007 TTTCACTTCTCAACTCGTAGATGTGTACAATGAGCTGGCGACTACAGATAAAGGCTCCTT 1066
Query 720 TGAAGTCATCTTAGTTTCAACAGACAGAGACTCAAGAGAGTTTAACATCAACATGACCAA 779
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGAAGTCATCTTAATTTCAACAGACAGAGACTCAAGAGAGTTTAACATCAACATGACCAA 1126
Query 780 CATGCCATGGCTTGCAATACCTTATGAGGACAGAACAAGACAAGACCTTTGTAGAATCTT 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1127 CATGCCATGGCTTGCAATACCTTATGAGGACAGAACAAGACAAGATCTTTGTAGAATCTT 1186
Query 840 CAGCATCAAACTCATACCTGCATTGGTCATCATAGGACCGGAAGAGAAAACAGTGACCAC 899
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1187 CAACGTCAAACTCATACCTGCATTGGTCATCATAGGACCCGAAGAGAAAACAGTGACCAC 1246
Query 900 AAACGCAAGAGAGATGGTATCGTTGTATGGATCAAGGAGTTTCCCATTCACAGAATCAAG 959
|||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 1247 AAACGCGAGAGAGATGGTATCATTGTATGGATCAAGGAGTTTTCCGTTCACGGAATCAAG 1306
Query 960 GATTGTTGAGTTAAAAGCTTGTTTGAAGAAAGAAGGTGATTCACTTCCAAGGAAAGTGAA 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1307 GATTGTTGAGTTAAAAGCTTGTTTGAAGAAGGAAGGTGATTCACTTCCAAGGAAAGTGAA 1366
Query 1020 GGATAAGAAGCATGAACATGAGCTAAAGCTGGATATGGCGAAAGCTTATGTGTGTGATTT 1079
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1367 AGATAACAAGCATGAACACGAGCTAAAACTGGATATGGCGAAAGCTTATGTGTGTGATTT 1426
Query 1080 CTGTAAGAAGCAAGGCAGGTTTTGGGCGTTTTCTTGCGATGCTTGCGATTATGATCTTCA 1139
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1427 CTGTAAGAAGCAAGGCAGGTTTTGGGCGTTTTCTTGCAATGCTTGTGATTATGATCTTCA 1486
Query 1140 TCCTACATGTGTGGAAGAACAAGACGCATTGTTGGTTTAG 1179
||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1487 TCCTACATGTGTGGAAGAAGAAGAAGCATTATTGGTTTAG 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5