BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889075
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30420.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1805 0.0
AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-1488... 176 4e-43
> AT4G30420.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:14877069-14878914 FORWARD LENGTH=1122
Length=1122
Score = 1805 bits (977), Expect = 0.0
Identities = 1072/1118 (96%), Gaps = 5/1118 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATGACGATGATTCAACTGTGTTATGCTGGAGTGACTCTCTTTGCAAGAGCTACT 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGACGATGATTCAACTATGTTATGCAGGAGTGACTCTCTTTGCAAGAGCTACT 60
Query 61 TTGGTTCATGGATTAAGCCCTCGGGTTTTTATCCTCTATAGGCAAGCCTTTGCAACCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGGTTCATGGATTAAGCCCTCGGGTTTTTATCCTCTATAGGCAAGCCTTTGCCACCATT 120
Query 121 TTCATCTTCCCATTTCTCTACTTATCCAGGAGAAAATCAAAGATAGCCATATCTTCTTTG 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCATCTTCCCATTTCTTTACTTATCCAGGAGAAAATCAAAGATAGCTATATCTTCTTTG 180
Query 181 GATCTAAAGAGCTTTTCTTTAATATTCTTGGTCTCGCTTATAGGCATTACAATCAATCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCTAAAGAGCTTTTCTTTAATATTCTTGGTCTCGCTTATAGGCATTACAATCAATCAA 240
Query 241 AATCTATATCTTGAAGGCCTTTACTTAACTTCATCATCGATGGGAAGTGCAGTGGGTAAC 300
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AATCTATATCTTGAAGGTCTTTACTTAACTTCATCATCAATGGGAAGTGCAGTGGGTAAC 300
Query 301 ATCATCCCTGCAATCACCTTCCTCATCTCATTTCTCGCCGGATACGAGAAACTGAATATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 ATCATCCCTGCAATCACCTTCCTCATCTCATTTCTCGCCGGATACGAGAAACTGAATCTC 360
Query 361 CGAGATATAAGAGGCTTAGCAAAGATCGCAGGGACGATCCTCTGTGTAGCAGGAGCGATC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGAGATATAAGAGGCTTAGCAAAGATCGCAGGGACGATCCTATGTGTAGCAGGAGCGATC 420
Query 421 TCCATGACTCTGCTTCGTGGACCAAAGATTCTCAACTCAGAATCCGCTTTACCAATCGAT 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 421 TCCATGACTCTTCTTCGTGGACCAAAGATTCTCAACTCAGAATCCGCTTTACCGATCGCT 480
Query 481 AAATCGGTATTAGGAAATCTTAAAGACCAGAACACGTGGTTGATTGGTTGTTTGTTCTTG 540
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AAATCGGTATTAGGACATCTTAAAGACCAGAACACGTGGTTGATTGGCTGTTTGTTCTTG 540
Query 541 TTCTCTAGTACTCTTTGCTGGTCCTTTTGGCTTATACTTCAGGTTCCAATCTCTGCCTAC 600
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTTCTAGCACTCTTTGTTGGTCCTTTTGGCTTATACTTCAGGTTCCAATCTCTGCCTAC 600
Query 601 TATCCAGATAACCTCTCTTTATCAGCATGGATGTGTTTATTCGGAACGATACAATGTGCA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TATCCAGATAACCTCTCTTTATCAGCATGGATGTGTTTATTCGGAACAATACAATGTGCA 660
Query 661 GTCGTCACTTTCTTCCTAGAGAAGGATCCAAACGCTTGGATTCTCCATTCCTACTCCGAG 720
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 661 GTCGTCACTTTCTTCCTTGAGAAAGACCCAAACGCTTGGATTCTCCATTCCTACTCCGAG 720
Query 721 TTTGCGACATGTCTCTACGCAGGAATTGGGGCGTCGGCACTTTCGTTTACAGTCCAAGCT 780
||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 721 TTTGCCACATGTCTCTATGCAGGAATTGGGGCGTCAGCACTTTCTTTTACGGTCCAAGCT 780
Query 781 TGGGCTATTGCAAAGAGAGGTCCTGTGTTTTCTGCACTGTTTAATCCTCTTTGTACAGTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGCTATTGCAAAGAGAGGTCCTGTGTTTTCTGCACTGTTTAATCCTCTTTGTACAGTC 840
Query 841 ATTGTAACAATCTTGGCTGCTCTGTTCTTCCAAGAAGAGATTTACACTGGAAGTTTACTC 900
||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 841 ATTGTCACAATCTTGGCTGCTTTGTTCTTCCATGAAGAGATTTACACTGGAAGTTTAATC 900
Query 901 GGAGGATTAGGG-GTGATAATGGGACTTTACACTGTGCTATGGGGTAAAGCAAAAGATGT 959
|||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 GGAGGATT-GGGCGTGATATTGGGACTTTACACTGTGCTCTGGGGTAAAGCAAAAGATGT 959
Query 960 TATGATTAATCAAGATCAGAGAGACAATGATCAGAACTCAGAAGTAAAGATTCATATAGA 1019
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 960 CATGATGAATCAAGATCAGAGAGACAATGATCAGAAGTCAGAAGTGAAGATTCATATAGA 1019
Query 1020 AGATTCTTCAAACACAATTATCTGTAACAGAGATCTGAAGAATCCTCT-TCTGTCCAA-C 1077
||||||||||||||||| |||||||| | |||||||||||||||||| | ||||||| |
Sbjct 1020 AGATTCTTCAAACACAACAATCTGTAATAAAGATCTGAAGAATCCTCTGT-TGTCCAAAC 1078
Query 1078 ACAAATCAACAGAAGAAATCCAAACACATCACCAACTA 1115
||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 ACAAATCAACAGAAGAAATCCAAACACATCAACAACTA 1116
> AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14878783-14880331
REVERSE LENGTH=1124
Length=1124
Score = 176 bits (95), Expect = 4e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Minus
Query 991 CAGAACTCAGAAGTAAAGATTCATATAGAAGATTCTTCAAACACAATTATCTGTAACAGA 1050
||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1124 CAGAAGTCAGAAGTGAAGATTCATATAGAAGATTCTTCAAACACAACAATCTGTAATAAA 1065
Query 1051 GATCTGAAGAATCCTCT-TCTGTCC-AACACAAATCAACAGAAGAAATCCAAACACATCA 1108
||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1064 GATCTGAAGAATCCTCTGT-TGTCCAAACACAAATCAACAGAAGAAATCCAAACACATCA 1006
Query 1109 CCAACTA 1115
||||||
Sbjct 1005 ACAACTA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5