BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889101

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07280.1 | Symbols: EMS1, EXS | Leucine-rich repeat transmem...   403    4e-112


> AT5G07280.1 | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane 
protein kinase | chr5:2285040-2288686 FORWARD LENGTH=3647
Length=3647

 Score =  403 bits (218),  Expect = 4e-112
 Identities = 258/278 (93%), Gaps = 0/278 (0%)
 Strand=Plus/Plus

Query  1     ATGACAAAGAGAGTGAAACAAAGAGATGATCCAGAGCGAATGGAGGAAAGCATATTAAAA  60
             ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct  2605  ATGACAAAGAGAGTGAAGCAAAGAGATGATCCAGAGCGAATGGAGGAAAGCAGATTGAAA  2664

Query  61    GAGTTTGTTGAACAGAACCTCTACTTCTTAAGTGGAAGCAGATCAAGAGAGCCATTAAGC  120
             | ||||||||| |||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct  2665  GGGTTTGTTGATCAGAACCTGTATTTCTTAAGTGGAAGCAGATCAAGGGAGCCTTTAAGC  2724

Query  121   ATCAATATAGCAATGTTCGAGCATCCGCTTCTGAAGATGCGTTTAGGAGATATTATTGAG  180
             ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct  2725  ATCAATATAGCAATGTTCGAGCAGCCGCTTCTGAAGGTGCGTTTAGGAGATATTGTCGAG  2784

Query  181   GGTACAAATCATTTCTCTAAGAAGAACATCATAGGAGACGGTGGTTTTGGGACGAATTAC  240
             | |||| |||||||||||||||||||||| ||||||||||||||||||||||||  ||||
Sbjct  2785  GCTACAGATCATTTCTCTAAGAAGAACATTATAGGAGACGGTGGTTTTGGGACGGTTTAC  2844

Query  241   AAAGCTTGTTTACCAGGTGGGAAAACAATAGCGGTGAA  278
             ||||||||||||||||||| ||||||| ||||||||||
Sbjct  2845  AAAGCTTGTTTACCAGGTGAGAAAACAGTAGCGGTGAA  2882



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5