BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889105
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30170.1 | Symbols: | Peroxidase family protein | chr4:1476... 1496 0.0
AT2G18980.1 | Symbols: | Peroxidase superfamily protein | chr2... 725 0.0
AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:268... 82.4 8e-15
> AT4G30170.1 | Symbols: | Peroxidase family protein | chr4:14762841-14764627
FORWARD LENGTH=1204
Length=1204
Score = 1496 bits (810), Expect = 0.0
Identities = 926/982 (94%), Gaps = 8/982 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTATACTGCCCAAACCAtcttctccata-ttttctcttcttcttctcctttc 59
||||||||| ||||| | |||||||||||||||| | |||| |||||| |||||||||||
Sbjct 82 ATGGAGAAGAATACTTCTCAAACCATCTTCTCCA-ACTTTTTTCTTCTCCTTCTCCTTTC 140
Query 60 ttcatgtgtctctGCTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTCGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 141 TTCATGTGTCTCTGCTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTGGA 200
Query 120 AGGCATTGTCCGTAACGCCGTCCGTCAGAAATTCCAGCAGACTTTTGTTACGGCTCCGGC 179
| |||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 201 AACCATTGTACGTAACGCTGTCCGTCAGAAATTCCAGCAGACTTTCGTTACCGCTCCGGC 260
Query 180 CACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCGGGGGTGTGATGCGTCAATAATGAT 239
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 261 CACTCTTCGCCTCTTCTTCCACGATTGCTTCGTTCGTGGATGTGATGCGTCAATAATGAT 320
Query 240 AGCATCACCGTCGGAGAGAGACCATCCAGATGACATGTCATTGGCCGGAGATGGATTCGA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 AGCATCACCATCGGAGAGAGACCATCCAGATGACATGTCATTGGCCGGAGACGGATTCGA 380
Query 300 CACGGTGGTGAAGGCGAAGCAAGCCGTTGATAGCAATCCCAACTGCCGCAACAAAGTCTC 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 381 CACGGTGGTGAAGGCGAAGCAAGCCGTTGATAGCAATCCCAATTGCCGCAACAAAGTCTC 440
Query 360 ATGTGCTGACATTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 ATGTGCTGACATTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCAAG 500
Query 420 CTACCCGGTGGAGCTAGGGAGGAGAGATGGCAGAATCTCCACGCAGTCCAGCGTTCAAAA 479
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 501 CTACCCGGTGGAGCTAGGGAGGAGAGATGGCAGAATCTCCACGAAGGCCAGCGTTCAAAG 560
Query 480 CCAACTGCCTCAGCCCG-GTTTTAACCTAAACCAGCTCAACGGCATGTTTAGCCGTCACG 538
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CCAATTGCCTCAGCCCGAG-TTTAACCTAAACCAGCTCAACGGCATGTTTAGCCGTCACG 619
Query 539 GTCTCTCTCAAACCGATATGATCGCCCTCTCAGGAGCACACACTATAGGATTTGCACATT 598
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 620 GCCTCTCTCAAACCGATATGATTGCCCTCTCAGGAGCACACACTATAGGATTTGCACATT 679
Query 599 GTGGAAAATTCACAAAGAGAATCTACAATTTTAGCCCTAGC--CGACGTATCGATCCGAC 656
|||||||| | |||||||||| |||||||||||||||| | | ||||||||| ||||
Sbjct 680 GTGGAAAAATGTCAAAGAGAATATACAATTTTAGCCCTA-CAAC-ACGTATCGACCCGAG 737
Query 657 TATTAATAGTGGATACGTGATTCAGCTTAAGCAAATGTGCCCGATCGGAGTCGACGTACG 716
||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 738 TATAAACCGTGGATACGTGGTTCAGCTTAAGCAAATGTGCCCGATCGGTGTCGACGTAAG 797
Query 717 AATTGCAATCAACATGGATCCGACCAGTCCACGTACTTTCGATAATGCTTATTTCAAGAA 776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AATCGCAATCAACATGGATCCGACCAGTCCACGTACTTTCGATAATGCTTATTTCAAGAA 857
Query 777 TCTCCAACAAGGAAAGGGTTTGTTCTCGTCAGATCAAATCTTGTTTACAGATCAACGATC 836
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 858 TCTCCAACAAGGAAAGGGTTTGTTCACGTCAGATCAAATCTTGTTCACAGATCAACGGTC 917
Query 837 AAGATCTACAGTTAATACATTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTTATCAC 896
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 918 AAGATCTACAGTTAATTCGTTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTCATCAC 977
Query 897 AGCCATCACCAAGTTGGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAG 956
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AGCGATCACGAAGTTAGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAG 1037
Query 957 GGATTGTTCACGTGCCAATTAG 978
|||||||||||||| |||||||
Sbjct 1038 GGATTGTTCACGTGTCAATTAG 1059
> AT2G18980.1 | Symbols: | Peroxidase superfamily protein | chr2:8233335-8235316
REVERSE LENGTH=1078
Length=1078
Score = 725 bits (392), Expect = 0.0
Identities = 791/981 (81%), Gaps = 37/981 (4%)
Strand=Plus/Plus
Query 18 CCAAACCAtcttctccatat-tttctcttc-t-tc-ttctcctttcttcatgtgtctctG 73
||||| || ||||||||| | || |||||| | || || || |||| |||| ||||| ||
Sbjct 31 CCAAAGCAGCTTCTCCAT-TGTTGCTCTTCTTCTCATTTTCTTTTCCTCATCTGTCTTTG 89
Query 74 CTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTCGAAGGC-ATTGTCCGT 132
||||||| | |||| ||| |||| ||| |||||||| ||||| ||| | ||||||||
Sbjct 90 CTCAGCTGCAGACAAATTTTTACCGGAAGTCATGTCCTAACGTGGAA-ACTATTGTCCGC 148
Query 133 AACGCCGTCCGTCAGAAA-TTCCAGCAGACTTTTGTTACGGCTCCGGCCACTCTCCGCCT 191
|| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 149 AATGCCGTCCGCCA-AAAGTTCCAGCAGACTTTTGTTACGGCTCCGGCCACCCTCCGCCT 207
Query 192 CTTCTTCCACGATTGCTTCGTTCGGGGGTGTGATGCGTCAATAATGATAGCATCACCGTC 251
|||||||| ||||||||||| || || |||||||| || ||| || | |||||||| ||
Sbjct 208 TTTCTTCCATGATTGCTTCGTCCGTGGATGTGATGCTTCGATATTGCTGGCATCACCATC 267
Query 252 GGAGAGAG-ACCATCCAGATGACATGTCATTGGCCGGAGATGGATTCGACACGGTGGTGA 310
|||| || | || || ||||||| |||| | |||||||| || || || ||||||| |
Sbjct 268 TGAGA-AGGATCACCCTGATGACAAGTCACTAGCCGGAGACGGGTTTGATACGGTGGCAA 326
Query 311 AGGCGAAGCAAGCCGTTGATAGCAATCCCAACTGCCGCAACAAAGTCTCATGTGCTGACA 370
|||| ||||| ||| ||||||| | ||||||||||| |||||||||||||| |||||||
Sbjct 327 AGGCAAAGCAGGCCCTTGATAGGGACCCCAACTGCCGTAACAAAGTCTCATGCGCTGACA 386
Query 371 TTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCGAGCTACCCGGTGG 430
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
Sbjct 387 TTTTGGCTCTCGCCACTCGTGACGTCGTCGTTTTGACCGGAGGACCGAACTATCCGGTAG 446
Query 431 AGCTAGGGAGGAGAGATGGCAGAATCTCCACGCAGTC-C-AGCGTTCAAAACCAA-CTGC 487
|||||||||||||||| |||||| | || || ||| | ||||||||| || | || |
Sbjct 447 AGCTAGGGAGGAGAGACGGCAGACTATCGAC--AGTGGCTAGCGTTCAACAC-AGTCTAC 503
Query 488 CTCAGCCCGGTTTTAACCTAAACCAGCTCAACGGC-ATGTTTAGC-CGTCACGGTCTCTC 545
| ||||| |||| || | |||| || ||| | ||||| || ||||||||||| ||
Sbjct 504 CCCAGCCTAGTTTCAAATTGGACCAACTTAACA-CTATGTTC-GCTCGTCACGGTCTATC 561
Query 546 TCAAACCGATATGATCGCCCTCTCAGGAGCACACACTATAGGATTTGCACATTGTGGAAA 605
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 562 CCAAACCGATATGATTGCACTCTCAGGAGCACATACTATAGGATTCGCACATTGTGGCAA 621
Query 606 ATTCAC-AAAGAGAATCTACAATTTTAGCCCTAGCCGACGTATCGATCCGACTATT-AAT 663
|| | ||| ||||| ||||||||||| |||| || | || ||||||||| || |||
Sbjct 622 GTTTTCGAAA-AGAATTTACAATTTTAGTCCTAAACGTCCAATTGATCCGACT-TTGAAT 679
Query 664 AGTGGATACGTGATT-CAGCTTAAG-CAAATGTGCCCGAT-CGGAGTCGACGT-ACGAAT 719
| | | |||| || || || || ||||||||||| || ||| |||||| | | || |
Sbjct 680 ATTCGTTACGCC-TTACAA-TTGAGACAAATGTGCCCCATTCGG-GTCGACTTGAGGA-T 735
Query 720 TGCAATCAACATGGATCCGACCAGTCCACGTAC-TTTCGATAATGCTTATTTCAAGAATC 778
||||| ||||||||||| || |||| ||| ||| || |||||||||||||| || |
Sbjct 736 CGCAATTAACATGGATCCTACTTCTCCAAATACATTT-GACAATGCTTATTTCAAAAACC 794
Query 779 TCCAACAAGGAAAGGGTTTGTTCTCGTCAGATCAAATCTTGTT-TACAGATCAACGATCA 837
||||| |||| | |||||||||| ||||||||||| | ||||| | | ||| |||||||
Sbjct 795 TCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT-CTGATGAACGATCT 853
Query 838 AGATCTACAGTTAATACATTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTTATCACA 897
||||| || || ||| ||||||| |||||||| | ||||||||||||||||||| |
Sbjct 854 AGATCAACTGTCAATTCATTTGCTTCTAGTGAAGCAACTTTTAGACAAGCTTTTATTTCG 913
Query 898 GCCATCACCAAGTTGGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAGG 957
|| || || ||||||||||||||||| ||| || ||||| || |||||||| || ||
Sbjct 914 GCTATAACGAAGTTGGGTCGGGTTGGAGTTAAAACCGGTAACGCGGGTGAGATAAGACGG 973
Query 958 GATTGTTCACGTGCCAATTAG 978
||||||||||||| ||||||
Sbjct 974 GATTGTTCACGTGTTAATTAG 994
> AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:26894856-26896488
FORWARD LENGTH=1218
Length=1218
Score = 82.4 bits (44), Expect = 8e-15
Identities = 171/229 (75%), Gaps = 22/229 (10%)
Strand=Plus/Plus
Query 181 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCGGGGG-TGTGATGCGTCAATAATGAT 239
|||||||||||||||||||||||||||||||| | || ||||||||||| | |||||
Sbjct 221 ACTCTCCGCCTCTTCTTCCACGATTGCTTCGT-CAATGGATGTGATGCGTCGGTCATGAT 279
Query 240 AGCA-TCACCG--T-CGGA----G---AGA-G-ACCATCCAGATGACATGTCATTGGCCG 286
|| ||| || | | | | ||| | | |||||||| | || || |||||||
Sbjct 280 T-CAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGGCCG 338
Query 287 GAGATGGATTCGACACGGTGGTGAAGGCGAAGCAAGC-CGTTGATAGCAATCCCAACT-G 344
|||||||||| ||| ||| | || || ||| |||| | |||| || ||||||| | |
Sbjct 339 GAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTC-TTGAC-GCTATCCCAAGTTG 396
Query 345 CCGCAACAAAGTCTCATGTGCTGACATT-TTGGCTCTCGCCACTCGTGA 392
| ||||||||||| |||||||| ||| ||| || | ||||| |||||
Sbjct 397 CAAAAACAAAGTCTCTTGTGCTGATATTCTTG-CTTTAGCCACCCGTGA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5