BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889115

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30074.1 | Symbols: LCR19 | low-molecular-weight cysteine-ri...   514    2e-145


> AT4G30074.1 | Symbols: LCR19 | low-molecular-weight cysteine-rich 
19 | chr4:14699737-14700599 REVERSE LENGTH=527
Length=527

 Score =  514 bits (278),  Expect = 2e-145
 Identities = 334/361 (93%), Gaps = 4/361 (1%)
 Strand=Plus/Plus

Query  2    TGGTTTCCATCATCTTCTCTATCATGCTTGCTTCCGTTGAAAATAAGGTAAAAGCAAATA  61
            |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  62   TGGTTTTCATCATCTTCTCTATCATGCTTGCTTCCGTTGAGAATAAGGTAAACGCAAATA  121

Query  62   CATGCA-CAGAGGGTCTTGGTAATTGTCAGCAATGTGATGAGAGATGCAAGGCCA-ACCA  119
            |||||| | |||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct  122  CATGCATC-GAGGGTATTGGTAATTGTCAGCAATGTGACGTGAGATGCAAGGCCAGA-CA  179

Query  120  CGGACCAGCGGCCAAAGGCGGTTGCGACCCCAAGTTTCAACTATGCACGTGCTATTACCC  179
            |||||||||||||||||||| ||| ||| |||| |||||||||||||||||| |||||||
Sbjct  180  CGGACCAGCGGCCAAAGGCGCTTGTGACTCCAAATTTCAACTATGCACGTGCAATTACCC  239

Query  180  GTGCGGTCAGGGTCCATCGCCTCCGCAGCCCAAAAAATGCTATGGTGGGGCTGGCGTATG  239
             ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct  240  TTGCGGACAGGGTCCATCGCCTCCGCAGCCCAAAAAATGTTATGGTGGAGCTGGCATTTG  299

Query  240  CAGCGATAAATGTGGGCCTCAGTGTTGCAACCAAAACTGTGCGCAAAAGTATAATCAAGG  299
            |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  CAGCGATAGATGTGGGGCTCAGTGTTGCAACCAAAACTGTGCGCAAAAGTATAATCAAGG  359

Query  300  AACTGGATTTTGTGACAGCATTGGCCATACTTATTTGTGCAAATGCCAATATAATTGCTA  359
            || |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct  360  AAGTGGATTTTGTGACAGCATTGGCAATACTTCTTTGTGTAAATGCCAATATAATTGCTA  419

Query  360  A  360
            |
Sbjct  420  A  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5