BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889117
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30064.1 | Symbols: LCR61 | low-molecular-weight cysteine-ri... 318 1e-86
> AT4G30064.1 | Symbols: LCR61 | low-molecular-weight cysteine-rich
61 | chr4:14694302-14694643 FORWARD LENGTH=237
Length=237
Score = 318 bits (172), Expect = 1e-86
Identities = 214/234 (91%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 ATGGCAAAGACAGCTTCTTCACTTGTTCTCCCCATCATCTTCCTTGTTATGTTTGCTTTA 60
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGCCAAGACAGCTTCTTCACTTGTTCTCCCCATCATCTTCCTTGTAATGTTTGCATTA 60
Query 61 GTTGCGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTGGTGTTATTAGTGACTGC 120
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 61 GTTGAGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTGGTGTGATTACCGACTGT 120
Query 121 AGTATGGCTTGCAAGTCTAAATTTGGATCA-AACGCACGTGGCTACTGTGACCGAGATGG 179
||| || |||| |||| ||||||| || || ||||||||||||||||||||||||||
Sbjct 121 AGTGGGGAATGCATTTCTAGATTTGGACCACAA-GCACGTGGCTACTGTGACCGAGATGG 179
Query 180 TGGTTCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGCTGATAAGTCC-CATA 232
|||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 180 TGGTTCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGCTGATAAG-CCACATA 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5