BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889125

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29990.1 | Symbols:  | Leucine-rich repeat transmembrane pro...   497    2e-140


> AT4G29990.1 | Symbols:  | Leucine-rich repeat transmembrane protein 
kinase protein | chr4:14665691-14670030 REVERSE LENGTH=3334
Length=3334

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 309/329 (94%), Gaps = 0/329 (0%)
 Strand=Plus/Plus

Query  2     ACTTAGACCCCGAGTATTACATGACGCGGCAAATGAATGAGAAGAGTGATGTTTACAGCT  61
             |||||||||| |||||||||   |||||||||||||| ||||||||||||||||||||||
Sbjct  2811  ACTTAGACCCTGAGTATTACGCAACGCGGCAAATGAACGAGAAGAGTGATGTTTACAGCT  2870

Query  62    TCGGGGTGGTTCTTCTTGAAGTCATAACAGGAAAACCGGCGATTTCGCGTTCAAGAACAG  121
             |||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||
Sbjct  2871  TCGGGGTGGTTCTTCTTGAAGTAATAACAGGAAAACCGGCAATTTGGCATTCAAGAACAG  2930

Query  122   AGAGTGTGCATCTATGTGATCAGGTTGGTTCAATGTTGGCGAATGGAGACATAAAATGCA  181
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  2931  AGAGTGTGCATCTAAGTGATCAGGTTGGTTCAATGTTGGCGAATGGAGACATAAAAGGTA  2990

Query  182   TTGTGGATCAACGTCTAGGAGATAGATTTGAGGTTGGCTCGGCTTGGAAGATCACTGAAA  241
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  2991  TTGTGGATCAACGTCTGGGAGATAGATTTGAGGTTGGCTCGGCTTGGAAGATCACTGAAC  3050

Query  242   TAGCATTGGCTTCTGCGTCTGAGCGTTCAGAGCAAAGACTGACGATGAGCCAAGTCGTTA  301
             |||||||||||| |||||||||| ||||||| ||||||| ||| ||||||||||||||||
Sbjct  3051  TAGCATTGGCTTGTGCGTCTGAGAGTTCAGAACAAAGACCGACAATGAGCCAAGTCGTTA  3110

Query  302   TGGAGCTGAAACAGAGTGTCTTTGGGAGA  330
             ||||||||||||||||| |||||||||||
Sbjct  3111  TGGAGCTGAAACAGAGTATCTTTGGGAGA  3139



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5