BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889132
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29910.1 | Symbols: ORC5, ATORC5 | origin recognition comple... 2362 0.0
> AT4G29910.1 | Symbols: ORC5, ATORC5 | origin recognition complex
protein 5 | chr4:14627963-14630740 REVERSE LENGTH=1928
Length=1928
Score = 2362 bits (1279), Expect = 0.0
Identities = 1500/1606 (93%), Gaps = 18/1606 (1%)
Strand=Plus/Plus
Query 7 AAAGAGGAGAGTTCGAAAGTCACTCGAAGAAGCACTAGGTCATCAGCTTCTGTAACTGTT 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AAAGAGGAGAGTTCGAAAGTCACTCGAAGAAGCACTAGGTCATCAGCTTCTGTAACTGTT 201
Query 67 GAGAATC-CAGAACCTATTGAATCCCACCCACCAACCATTGATGATCTCACATTTGGGGA 125
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 202 GAGAA-CTCAGAACCTATTGAATCCCACACACCAACCATTGATGATCTCACATTTGGGGA 260
Query 126 TGAATCAATCAC-TTTGGATGCTGTTCTATCTGATTTTCCTGGCAGACGCTCTCAGATTT 184
||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 261 AGAATCAATCACAATT-GATGCTGTTCTATCTAATTTTCCAGGCAGACGCTCTCAGATTT 319
Query 185 TCGACTTTATTCGACTTATGGGCCCGTTGGATTGCCCTACTCTTCCAATAATGATCTATG 244
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 320 TCGACTTTATTCGACTTATGGGGCCGTTAGATTGCCCTACTCTTCCAATAATGATCTATG 379
Query 245 GAGGCGCATCTACTGGAAAAACCAGTGTTGTTCTTCAGGTGCTCAGGCATCTCAATCGCC 304
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 380 GAGGTGCTTCTACGGGAAAAACCAGTGTTGTTCTTCAGGTGCTCAGGCATCTCAATCGTC 439
Query 305 CCTTTGTTTATTCAAGCTGTCGTACATGTTACAATCCGCGTATCTTGTTTGAGTCGATCC 364
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 440 CCTTTGTTTATTCAAGCTGTCGTACGTGTTACAATCCCCGTATCTTGTTTGAGTCGATTC 499
Query 365 TGAATCAGTTGTTGCTACATAGGAAATGTTCTTCAAACGGGTATTCTAGTGCGAAACGAT 424
||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 500 TGAATCAGTCGTTGCTACATAGGAAGTGTTCTTTAAACGGGTATTCTAGTGCGAAACGAT 559
Query 425 GTGACAAGCCATCTGATTTTGTCAACTTGGTTCGTGAAGCCCTTAGTAATGTGATAAAGA 484
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 560 GTGACAAGCCATCTGATTTTGTCAACTTGCTTCGTGAAGCCCTTAGTAGTGTGATAAAGA 619
Query 485 CTCTCGAGTCTCCTTCCGGAACCTCAAGACT-AAATAAGCCAGATGAAAAACCCATGGGG 543
||||||||||| |||||| |||||||||| | | ||||||| ||||||||||||||||||
Sbjct 620 CTCTCGAGTCTACTTCCGAAACCTCAAGA-TCAGATAAGCCGGATGAAAAACCCATGGGG 678
Query 544 AAGATGGTGTACTTAATACTTGATAATGTGGATCTTATCAGAGACTGGGACAAAGGGAGT 603
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 679 AAGATGGTGTACTTAATACTTGATAATGTGGATCTTATCAGAGACTGGGATAAAGGCACC 738
Query 604 ATGATTCTTCAGTTTCTTTTCAGTTTGGATTCTGTTTTGAAGATGCCTCAACTTGGTATA 663
|| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 739 ATCATTCTGCAGTTTCTTTTCAGTTTGTATACTGTTTTGAAGATGCCTCAACTTGGTATA 798
Query 664 GTACTTATCAGCGGATTGCCACCAGATGTGTATTACTCAAACATGGGATACACAGACCCT 723
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 799 ATACTTATCAGTGGTTTGCCACCAGATGTGTATTACTCAAACATGGGATACACAGATCCT 858
Query 724 ATACCTCTTC-TTTTCCCTGAGTATTCTGAAGAGGATCTTCGTCAAATTTTCTTGAGAAA 782
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ATACCTCTTTATTTTCC-TGAGTATTCTGAAGAGGATCTTCGTCAAATTTTCTTGAGAAA 917
Query 783 TCAAGCTAACCCAAAACTGTACTCTGCATTCCTCGACGCTGTGTTGAGATCATTCTGTAG 842
|||| |||||| |||| |||||||||||||||| |||| |||||||| | ||||||||||
Sbjct 918 TCAACCTAACCGAAAATTGTACTCTGCATTCCTTGACGTTGTGTTGAAACCATTCTGTAG 977
Query 843 AGTCACCAGGAGAGTTGAGGAACTTTCCACTACCTTCTCATCATTGTTCAGAAAGTATTG 902
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||
Sbjct 978 AGTCACCAGGAGAGTTGAGGAACTGTCTACTACCTTCTCATTATTGTTCAGAAAGTTTTG 1037
Query 903 CGAACCGCTTGATGATTTAGGGATTTCACCTAATGAAGACATGAAGAGAAGGCTGTATAG 962
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1038 TGAGCCACTTGATGATTTAGGGATTTCACCAAATGAAGACATGAAGAGAAGGCTATATAG 1097
Query 963 TCATCTTAAACCGTTTATAGCTCCTTGTTTAAATGATG-TATTCAGGGTCTCCACTCACC 1021
|||||||| ||| |||| |||| |||||||||||| | ||||||||||||| | |||||
Sbjct 1098 CCATCTTAAGCCGCTTATTGCTCATTGTTTAAATGA-GATATTCAGGGTCTCTAGTCACC 1156
Query 1022 CTCATGATGGTGAAACCAGAGGCGAGAGAAGGCAGAAAGTCAGCTTCAGCTCTGAAAACC 1081
|||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1157 CTCATGATGGCGAAACCAGAGGCGAGAGAAGGCAGAAAGCCAGCTACAGTTCTGAAAACC 1216
Query 1082 GTGAAGAACTTAAAATATTGGACTTCCATATGTCTACTTCAGCAAAGTATCTTCTTATTG 1141
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1217 GTGAAGAACTTGAAATATTGGACTTCCATATGTCTACTTCAGCAAAGTTTCTTCTTCTTT 1276
Query 1142 CGGCATTTCTTGCTTCGAGAAACCCAGCAACGCTAGACGCGTCGATGTTTGACTCCACAG 1201
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1277 CGGCATTTCTCGCTTCGAGAAACCCAGCAACGCTAGACGCGTCAATGTTTGACTCCACAG 1336
Query 1202 GAGGCATGGATAATCGTAAAAGAAAGCGGAAGGCCTCTGAGAAATCAATGGAAAAGAAGG 1261
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GGGGAATGGATAATCGTAAAAGAAAGCGGAAGGCCTCTGAGAAATCAATGGAAAAGAAGG 1396
Query 1262 AAATTGCAGAACAGGAAGCAGTCATGAAAGGACCTGGAAGCTTTCCGCTGGAAAGATTAA 1321
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1397 AAATTGCAGAGCAGGAAGCAGTCATGAAAGGACCTGGAAGCTTTCCACTGGAAAGACTAT 1456
Query 1322 TGGCGATATTCCAGTGTATTGCCTCTGTTGGAGATTCTTCATTTGGGgaagagaacgaag 1381
||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 1457 TGGCGATATTCCAATGTATTGCCTCCGTTGGAGATTCTTCATTTGGCGAAGAGGACGAAG 1516
Query 1382 gagaagaagaagaagacgcaacgggttacga-aagagagaaTAACAATCTGATGTCTGAT 1440
| | |||||| || || |||||||||||| || |||||||||||||||||||||||||
Sbjct 1517 -A-A-GAAGAA-AACAC--AACGGGTTACGACAA-AGAGAATAACAATCTGATGTCTGAT 1569
Query 1441 ATTCTGCTGCAAGTGTCAAGTCTTTGTGATGCAAACTTTTTAATCAAAAGCGGAAGCTGC 1500
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1570 ATTCTGCTGCAAGTGTCAAGTCTATGTGATGCTAACTTTTTAATCAAAAGCGGAAGCTGC 1629
Query 1501 CCATTAGAAGGTTCTATTAGGTACCGTTCTATGGTCTCTGAATATCTGGCTCTGAAGGTT 1560
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1630 CCATTAGAAGGTTCTATTAGGTACCGTTCTATGGTCTCTGAAGATCTGGCTCAGAAGGTT 1689
Query 1561 GCGAAAAGCCTCAGCTTTCCACTAGCCAAATACTTGTACAGAAGAT 1606
|| ||||| || |||||||||||| |||||||||||||||||||||
Sbjct 1690 GCAAAAAGTCTTAGCTTTCCACTATCCAAATACTTGTACAGAAGAT 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5