BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889135
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29890.1 | Symbols: | choline monooxygenase, putative (CMO-... 1873 0.0
> AT4G29890.1 | Symbols: | choline monooxygenase, putative (CMO-like)
| chr4:14608833-14610998 FORWARD LENGTH=1397
Length=1397
Score = 1873 bits (1014), Expect = 0.0
Identities = 1187/1272 (93%), Gaps = 6/1272 (0%)
Strand=Plus/Plus
Query 1 ATGGTGACCACATTAAGGGCGTCGGTGCCGGAATTCCCATCACCGTCGCTAAAAACCACC 60
||| ||||||| |||| |||| | ||||||||||| | | | |||||||||||| |||||
Sbjct 36 ATGATGACCACGTTAACGGCGACAGTGCCGGAATTTCTACCCCCGTCGCTAAAATCCACC 95
Query 61 AGAGGATATTTCAATTCTCATGGTGATTTTGGCGTTTCAGTGTCTCAATTTGGTCGGAGA 120
||||||||||||||||||||| |||| |||||||||||| | ||| ||||| ||||||||
Sbjct 96 AGAGGATATTTCAATTCTCATAGTGAATTTGGCGTTTCAATCTCTAAATTTAGTCGGAGA 155
Query 121 AGATTTCTCAACCCGAGCAGAGTCTTCGCCGTTTCAGATATCAATAAGCAT-GTGACGGA 179
||||||| ||| |||| |||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 156 AGATTTCACAATCCGACCAGAGTCTTCGCCGTTTCAGATATCAGTAAGC-TCGTGACGGA 214
Query 180 GTTTGATCCGAAGATTCCGTTGGAGAGAGCATCTACTCCGCCGAGCTCGTGGTACACTGA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GTTTGATCCGAAGATTCCATTGGAGAGAGCATCTACTCCGCCGAGCTCGTGGTACACTGA 274
Query 240 TCCTAAATTCTACAGTTTCGAGCTTGATCGTGTCTTCTATGGAGGATGGCAAGCCGTAGG 299
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 275 TCCTCAATTCTACAGTTTCGAGCTCGATCGTGTCTTCTATGGAGGATGGCAAGCCGTAGG 334
Query 300 TTACTCTGATCAGATCAAGGAGAGTCGTGACTTTTTCACCGGGAGGCTTGGGGACGTAGA 359
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 335 CTACTCTGATCAGATTAAGGAGAGTCGTGACTTTTTCACCGGGAGGCTTGGAGATGTAGA 394
Query 360 GTATGTTGTGTGTAGAGAGGATAATGGAAAGATTCATGCTTTCCATAATGTATGTTCTCA 419
| ||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 395 TTTTGTTGTGTGTAGAGATGAGAATGGAAAGATACATGCTTTCCATAATGTATGCTCTCA 454
Query 420 CCATGCTTCTATCTTGGCTTCTGGAAATGGGAGGAAGTCTTGTTTTGTTTGCCCTTATCA 479
|||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 455 CCATGCCTCGATCTTGGCTTCTGGAAATGGGAGAAAGTCTTGTTTTGTTTGCCTTTATCA 514
Query 480 TGGATGGACGTATAGTTTGAGTGGATCGCTTGTCAAAGCTACTAGAATGAATGGGATAGA 539
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 515 TGGATGGACTTATAGCTTGAGTGGATCGCTTGTCAAAGCTACTAGAATGAGTGGGATACA 574
Query 540 GAACTTTGCATTAAGTGAAATGGGACTCAAACCTCTAAAAGTAGCTGTATGGGGACCTTT 599
||| ||| | ||||||||||||||||| |||||||||| ||| ||||| |||||||||||
Sbjct 575 GAATTTTTCTTTAAGTGAAATGGGACTGAAACCTCTAAGAGTGGCTGTGTGGGGACCTTT 634
Query 600 TGTTCTTCTCAAGGTGACT-CAAGCCACATCGAGGGACGGAGAAGTTGAGACTGATGGAT 658
||| ||||||||||||||| | ||||||||||||| | |||||||||||||| |||| ||
Sbjct 635 TGTGCTTCTCAAGGTGACTGC-AGCCACATCGAGGAAGGGAGAAGTTGAGACCGATGAAT 693
Query 659 TAGTGGCATCAGAATGGCTTGGTACTTCTGTGGGGAGGTTGAGCCAAGGTGGAGTTGATT 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 694 TAGTGGCATCAGAATGGCTTGGTACTTCCGTGGGGAGGTTGAGCCAAGGTGGAGTTGATT 753
Query 719 CCCCACTTAGTTACATATGCAGACGTGAATACACCATTCATTGTAATTGGAAGGTGTTCT 778
|||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 754 CCCCGCTTAGTTATATATGCAGACGTGAATACACCATTGATTGTAATTGGAAGGTGTTCT 813
Query 779 GTGATAACTACTTAGATGGCGGCTATCATGTACCTTATGCACATAAAGGTTTGATGTCGG 838
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTGATAACTACTTAGATGGTGGCTATCATGTACCTTATGCACATAAAGGTTTGATGTCGG 873
Query 839 GCCTTGATCTCGAAACCTATTCTACAACGATATTCGAAAAGGTTAGTATCCAAGAATGTG 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GACTTGATCTCGAAACCTATTCTACAACGATATTCGAAAAGGTTAGTATCCAAGAATGTG 933
Query 899 GAGGTGGTTCCAAGGTTTGTGAAGACGGTTTCGATAGGCTTGGGTCTCAAGCTCTATACG 958
|||||||||| |||||| | ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 934 GAGGTGGTTCAAAGGTTGGCGAAGACGGTTTTGATAGGCTTGGATCTGAAGCTCTATACG 993
Query 959 C-TTTCGTCTACCCAAATTTCATGATAAATAGGTATGGACCTTGGATGGACACGAATTTA 1017
| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 994 CGTTT-GTCTACCCAAATTTCATGATAAATAGGTATGGACCTTGGATGGACACCAATCTA 1052
Query 1018 GTGCGACCATTAGGACCAAGGAAATGTAAAGTTGTCTTCGATTATTTTCTTGATCCTACA 1077
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1053 GTGCTACCTTTAGGACCAAGGAAATGTAAAGTTGTCTTCGATTATTTTCTTGATCCTTCT 1112
Query 1078 TTAAAGGATGATGAAGCTTTCATCAAGAGAAGTTTGGAAGAAAGCGATAGAGTTCAGGTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1113 TTAAAGGATGATGAAGCTTTCATCAAGAGAAGTTTGGAAGAAAGCGATAGAGTTCAGATG 1172
Query 1138 GAAGATGTTGTGTTGTGTGAGAGTGTTCAAAGGGGTATCGAATCTCAGGCCTATGACAAA 1197
||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 1173 GAAGATGTTATGTTGTGTGAGAGTGTTCAGAGGGGTCTCGAATCTCAAGCCTATGACAAA 1232
Query 1198 GGAAGATATGCTCTTGTGGAGGAACCAATGCACCACTTCCATTGTTTGCTACATCACAAT 1257
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1233 GGAAGATATGCTCTTGTGGAGAAACCAATGCATCACTTCCATTGTTTGCTACATCACAAT 1292
Query 1258 CTTAAACTGTGA 1269
|| |||||||||
Sbjct 1293 CTCAAACTGTGA 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5