BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889149
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1147 0.0
AT4G29770.2 | Symbols: | Target of trans acting-siR480/255. | ... 671 0.0
AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 494 7e-139
> AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29770.2);
Has 63 Blast hits to 63 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14574114-14575148
FORWARD LENGTH=843
Length=843
Score = 1147 bits (621), Expect = 0.0
Identities = 774/848 (91%), Gaps = 10/848 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCGATTATTACAATCTATGTCAAGGGTGGCTGGCCGTTGTCATCCAGATTGC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTGAGCGATTATTACAATCTATGTCAAGGGTGGCTGGCCGATGTCATCCAGATTGC 60
Query 61 GTGAAAGCAAACAATGAGCAAGAAGATTACGATGCATCTCAGTCTGCAGCTTTGGTAGCT 120
|| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 GTAAAAGCAAGTGATGAGCAAGAAGATTACCATGCATCTCAAAATGCAGCTTTGGTAGCT 120
Query 121 GTGAATCTGATTAGCTCTGCAAGGTTTATGCTCAAACTCGACACTGAATTTACCGAGTAC 180
|||||||||||||||||||||||||| || || ||||||||| |||| ||||| ||||||
Sbjct 121 GTGAATCTGATTAGCTCTGCAAGGTTAATACTGAAACTCGACGCTGAGTTTACTGAGTAC 180
Query 181 TCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGACCCGGGAGAAATGGATCAA 240
|||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 181 TCAGCTCAGTTTTTGATGGACAATGCTGGAAAGGAAGACGACCCGGGAGAAGTGGATCAA 240
Query 241 CAACGCAGTCAGGTCACTACCGAAAACTGCCTTCGCTACTTGGCGGAAAACGTTTGGACC 300
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CAACGCAATCAGGTCACGACCGAAAACTGCCTTCGCTACTTGGCCGAAAACGTTTGGACC 300
Query 301 AAGAGGGAAGATCGGCAGAGAG-ACATGGATCAACAACGCTGTGTGCTCACTGTCAAGGA 359
|||| |||| || ||||| ||| | ||||||||||||||| ||||||||||||||| ||
Sbjct 301 AAGAAGGAAAATGGGCAGGGAGGA-ATGGATCAACAACGCCCTGTGCTCACTGTCAAAGA 359
Query 360 CTGCCTTG-AACTTGCTTTTAAAAAGGGGCTACCGAGAAGAGAACATTGGGCACATTTGG 418
|||| ||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 360 CTGC-TTGGAACTTGCTTTTAAAAAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGG 418
Query 419 GATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTCCTCGCGTTCCCGTGAAAGGAG 478
||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 419 GATGTACCTTCAAGGCTCCCCCATTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAG 478
Query 479 AAGTGGTTGAGGCTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCGGTGG 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 479 AAGTGGTTGAGGTTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTG 538
Query 539 GAGCAAAACTGCATTTGTTCAGTCCGCAGATTGATCGTGTTGGAGAGGG-GATTTACGAT 597
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
Sbjct 539 GAGCAAAACTGCATTTGTTCAGTCCGCAGATTGATAATGTTGGAGAGGGAG-TTTACAAA 597
Query 598 GGCCCCGCGACAAGTAATGAAACATGCTATGTTGGACTTAGAGATGTGCTTATAGGTTCA 657
|||| | ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 598 GGCCTCACGACAGGTAATGAAACACACTATGTTGGACTTAGAGATGTGCTAATAGCTTCA 657
Query 658 GTGGAGAAGTTCGAGGGAGATACTGTTGCTATTGTGAAGATATCCTACAAGAAGAAGCTT 717
|||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 658 GTGGAGGAGTTCGAGGGAGATTCTGTTGCTATTGTGAAGATCTGCTACAAGAAGAAGCTT 717
Query 718 TCATTTGTCAAAGTGTCTCTGACCCGT-ATGTTTCTCTCAGCACCACATAATGGTGACGA 776
|||||| ||||||||||| ||| | || | ||||||||||| | ||||| ||||||| |
Sbjct 718 TCATTTATCAAAGTGTCTTTGAGC-GTTAGGTTTCTCTCAGTAGCACATGATGGTGATAA 776
Query 777 GTCTAAGTTCATAGGGCCAACAGGTCTGCTTGTTGACTTCCT-TGTCCCGCGCTTATCTA 835
|||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 777 GTCTAAGTTCATAGCGCCAACAGGTCTGCTTGTTGACTTC-TGTGTCCCGCGCTTATCTA 835
Query 836 TCAACTAA 843
||||||||
Sbjct 836 TCAACTAA 843
> AT4G29770.2 | Symbols: | Target of trans acting-siR480/255.
| chr4:14575718-14577643 FORWARD LENGTH=1168
Length=1168
Score = 671 bits (363), Expect = 0.0
Identities = 672/816 (82%), Gaps = 42/816 (5%)
Strand=Plus/Plus
Query 46 TGTCATCCAGATTGCGTGAAAGCAAACAATGAGCAAGAAGATTACGATGCATCTCAGTCT 105
|||||||| |||||| | |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 199 TGTCATCCCGATTGCTTAAAAGCAAACAATGAGCAAGAAGATTACGATGCATGTCAATCT 258
Query 106 GCAGCTTTGGTAGCTGTGAATCTGATTAGCTCTGCAAG-GTTTATGCT-CAA-ACTCGAC 162
||||||||||||||||||| | |||||||||||||| | ||| || || ||| | |||||
Sbjct 259 GCAGCTTTGGTAGCTGTGAGTTTGATTAGCTCTGCACGTGTT-AT-CTTCAAGA-TCGAC 315
Query 163 ACTGAATT-TACCGAGTACTCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGA 221
|| || | ||| ||||||||| |||||| |||| ||||||||| ||| |||||||| |
Sbjct 316 TCT-AAGTATACTGAGTACTCACCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGAAGT 374
Query 222 CCCGGGAGAAATGGATCAAC-AACGCAGTCAGGT-CACTACCGAAAAC-TGCCTTCGCTA 278
||||||||||||||||| || || ||||| | |||| || |||| | |||| | ||
Sbjct 375 TGAGGGAGAAATGGATCAACCAA-GCTGTCAG-TACACTGTCGGAAACCT-CCTTAGTTA 431
Query 279 CTTGGCGGAAAACGTTTGGACCAAGAGGGAAGATCGGCAGAGAGACATGGATCAACAACG 338
||||| |||||||||||||||||||| ||||| | |||||||||| ||||||||||||||
Sbjct 432 CTTGGTGGAAAACGTTTGGACCAAGAAGGAAGTTAGGCAGAGAGAAATGGATCAACAACG 491
Query 339 CTGTGTGCTCACTGTCAAGGACTGCCTTGAACTTGCTTTTAAAAAGGGGCTACCGAGAAG 398
| ||| | |||||||||| |||||| ||||| ||||||||||||| ||||| || ||||
Sbjct 492 CCGTGAGTTCACTGTCAAAGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAA- 550
Query 399 A-GAACATTGGGCACATTTGGGATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTC 457
| | ||||||||| ||| ||||||||| ||| || ||| ||||||||||||||||| |
Sbjct 551 ATGGACATTGGGCGCATGTGGGATGTATATTCCCGGTTCCTCCATTTGCTTGTCAAATAC 610
Query 458 CTCGCGTTCCCGTGAAAGGAGAAGTGGTTGAGGCT--AAGACTTTTGA-TGAAGCATTCA 514
||||||||||| |||||||||||||| |||||||| || | | | || |||||| || |
Sbjct 611 CTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTGCAA-A-TGT-GAGTGAAGCGTTGA 667
Query 515 AGCTGTTGGT--GCATCAACCGGTGGGAGCAAAACTGCATTTGTTCAGTCC-GCAGATTG 571
||||| ||| ||| ||||| | || ||||| ||||||||||||||||| | || |||
Sbjct 668 AGCTG--GGTATGCAACAACCAGCGGCAGCAAGGCTGCATTTGTTCAGTCCAG-AGTTTG 724
Query 572 ATCGTGTTGGAGAGGGGATTTACGATGGCCCCGCGACAAGTAATGAAACATGCTATGTTG 631
||| |||||||||||| |||||||||||||| | || ||||||||||| | |||||||
Sbjct 725 ATCTTGTTGGAGAGGGTATTTACGATGGCCC-GT--CAGGTAATGAAACACGATATGTTG 781
Query 632 GACTTAGAGATGTGCTTATAGGTTCAGT-GGAGAAGTTCGAGGGAGATACTGTTGCTATT 690
|||||||||||||||| || |||| || ||||||| || ||||||| |||||| || |
Sbjct 782 GACTTAGAGATGTGCTCAT-GGTTGAGGCGGAGAAGATCAAGGGAGAAACTGTTTTTACT 840
Query 691 GTGAAGATATCCTACAAGAAGAAG-CTTTCATTTGTCAAAGTGTCT-CTGACCCGTATGT 748
||| |||||| ||||||||||||| ||| ||||||||||||||||| | || |||||
Sbjct 841 GTGCAGATATGCTACAAGAAGAAGACTT-CATTTGTCAAAGTGTCTAC-GAGAAGTATGA 898
Query 749 TTCTCTCAGCACCACATAATGGTGACGAGTCTAAGTTCATAGGGCCAACAGGTCTGCTTG 808
||||| | || | || || ||||||||| || ||| || |||| || |||| ||||
Sbjct 899 TTCTCCC-GCTT-A-ATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCATGTCTACTTG 955
Query 809 TTGACTTCCT-TGTCCCGCGCTTATCTATCAACTAA 843
|||||||| | | |||| || || ||||||||||||
Sbjct 956 TTGACTTC-TGTATCCCACGTTTTTCTATCAACTAA 990
> AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5972419-5974156 FORWARD LENGTH=1076
Length=1076
Score = 494 bits (267), Expect = 7e-139
Identities = 553/684 (81%), Gaps = 48/684 (7%)
Strand=Plus/Plus
Query 180 CTCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGACCCGGGAGAAATGGATCA 239
||||||||||| |||| ||||||| ||||| ||||||||||||| ||||||||||||| |
Sbjct 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
Query 240 A-CAACGCAGTCAGGTCACTACCGAAAAC-TGCCTTC-GCTACT-TGGCGGAAAACGTTT 295
| ||| || |||| |||||| ||||||| || | || | || | ||| |||||| || |
Sbjct 300 ACCAA-GCTCTCAGTTCACTATCGAAAACTTG-CATCAG-TA-TATGGTGGAAAATGTCT 355
Query 296 GGACCAAGAGGGAAGATCG-GCAGAGAGACATGGATCAACAACGCTGTGTGCTCACTGTC 354
||| |||||| ||||| | |||| | || | || | |||| | |||||||||
Sbjct 356 GGAATAAGAGGTAAGAT-GTGCAG-G-GAGA-GG--GAGCAAC-C-----ACTCACTGTC 403
Query 355 AAGGACTGCCTTGAACT-TGCTTTTAA-AAAGGGGCTACCGAGAAGAGAACATTGGGCAC 412
|| |||||||||||| | |||||| || ||| ||||||||||||||||||||||||||||
Sbjct 404 AAAGACTGCCTTGAA-TGTGCTTTCAAGAAA-GGGCTACCGAGAAGAGAACATTGGGCAC 461
Query 413 ATTTGGGATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTCCTCGCGTTCCCGTGA 472
|| |||||||||| |||||||||||||||||||||||||| || || ||||| ||| |||
Sbjct 462 ATGTGGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGA 521
Query 473 AAGGAGAAGTGGTTGAGGCTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAAC 532
||||||||||| ||||| |||||| ||| |||||||| || ||||||||| | | ||||
Sbjct 522 AAGGAGAAGTGATTGAGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAAC 581
Query 533 CGGTGGGAGCAAAACTGCATTTGTTCAGTCCGCAGA--TTGATCGTGTTGGAGAGGG-GA 589
||||||| |||| ||| ||| |||||||||| ||| ||||| |||||||||||| |
Sbjct 582 CGGTGGGTGCAAGACTCCATGTGTTCAGTCC--AGACCTTGATAATGTTGGAGAGGGAG- 638
Query 590 TTTACGATGGCCC--C--GC--GACAAGTAATGAAACATGCTATGTTGGACTTAGAGATG 643
||||||| |||| | || | | |||| ||| || |||||||||||||||| ||||
Sbjct 639 TTTACGAGGGCCTGTCTAGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATG 698
Query 644 TGCTT-ATAGGTT-CAGTGGAGAAGTTCGAGGGAGATACTGTTGCTATTGTGAAGATATC 701
| | | |||| || ||||| | |||| ||||||| | |||||||||| |||||||||||
Sbjct 699 T-CATCATAG-TTGCAGTGAATAAGTCCGAGGGAAAAACTGTTGCTACTGTGAAGATATG 756
Query 702 CTACAAGAAGAAG-CTTTCATTTGTCAAAGTGTCTCTGACCCGTATGTTTCTCTCAGCAC 760
|||||||||||| ||| ||||||||||||||| | ||| |||||||||| || ||||
Sbjct 757 TTACAAGAAGAAGACTT-CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTC-CAGCTT 814
Query 761 CACATAATGGTGACGAGTCTAAGTTCATAGGGCCAACAGGTCTGCTTGTTGACTTCCT-T 819
| ||| || |||||| || | | || ||||||||||||||||||||||||| | |
Sbjct 815 GG--TGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTC-TGT 871
Query 820 GTCCCGCGCTTATCTATCAACTAA 843
|||| ||||||||||||||||||
Sbjct 872 ATCCCACGCTTATCTATCAACTAA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5