BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889155
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29740.2 | Symbols: CKX4, ATCKX4 | cytokinin oxidase 4 | chr... 2534 0.0
AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr... 121 3e-26
> AT4G29740.2 | Symbols: CKX4, ATCKX4 | cytokinin oxidase 4 | chr4:14566265-14569332
FORWARD LENGTH=1861
Length=1861
Score = 2534 bits (1372), Expect = 0.0
Identities = 1512/1580 (96%), Gaps = 7/1580 (0%)
Strand=Plus/Plus
Query 1 ATGACTAGTAATCTCGGTTCAAGCATCATCACCCTAATAACGCTTTTTATAAGTTTAACC 60
||||||| || |||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 87 ATGACTAATACTCTCTGTTTAAGCCTCATCACCCTAATAACGCTTTTTATAAGTTTAACC 146
Query 61 CCAACCTTAATCAAATCAGATGAGGGCATTGATGTCTTCTTACCCATATCACTCAACCTC 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 147 CCAACCTTAATCAAATCAGATGAGGGCATTGATGTTTTCTTACCCATATCACTCAACCTT 206
Query 121 ACGGTCCTAACCGATCCTTTCTCCATCTCCGCCGCTTCTCATGACTTCGGTAACATAACC 180
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 207 ACGGTCCTAACCGATCCCTTCTCCATCTCTGCCGCTTCTCACGACTTCGGTAACATAACC 266
Query 181 GATGAAAACCCCGGCGCCGTCCTCTGCCCTTCCTCCACCACGGAGGTGGCTCGTCTCCTT 240
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GACGAAAATCCCGGCGCCGTCCTCTGCCCTTCCTCCACCACGGAGGTGGCTCGTCTCCTC 326
Query 241 CGTTTCGCCAACGGAGGATTCTCGTACAA-CAGGGACTCAACCAGACCCACGCCTACTTT 299
|||||||| |||||||||||||| ||||| | || ||||||||| ||| || |||||||
Sbjct 327 CGTTTCGCTAACGGAGGATTCTCTTACAATAAAGG-CTCAACCAGCCCCGCGTCTACTTT 385
Query 300 CAAAGTGGCTGCTCGAGGCCAAGGCCACTCCCTCCGTGGCCAAGCCTCTGCACCCGGAGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CAAAGTGGCTGCTCGAGGCCAAGGCCACTCCCTCCGTGGCCAAGCCTCTGCACCCGGAGG 445
Query 360 TGTCGTCGTGAACATGACGTGTCTCGCCAAGGCGGCTAAACCAGCGGCGGTTGTTATCTC 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 446 TGTCGTCGTGAACATGACGTGTCTCGCCATGGCGGCTAAACCAGCGGCGGTTGTTATCTC 505
Query 420 AGCAGACGGGACTTACGCTGACGTGGCTGCCGGGACGATGTGGGTGGATGTTCTGAAGGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGCAGACGGGACTTACGCTGACGTGGCTGCCGGGACGATGTGGGTGGATGTTCTGAAGGC 565
Query 480 GGCGGGGGAGAGAGGCGTCTCGCCGGTTTCTTGGACGGATTATTTGTATCTTAGCGTTGG 539
||||| ||| |||||||||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 566 GGCGGTGGATAGAGGCGTCTCGCCGGTTACATGGACGGATTATTTGTATCTCAGCGTCGG 625
Query 540 CGGGACGTTGTCCAACGCTGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAG 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CGGGACGTTGTCGAACGCTGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAG 685
Query 600 TAGCGTTCATGAGCTTGACGTCATTACTGGAAAAGGTGAAATGATGACTTGCTCGCCAAA 659
|| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 686 TAACGTTCATGAGCTTGACGTTATTACCGGAAAAGGTGAAATGATGACTTGCTCTCCAAA 745
Query 660 GTTAAACCCTGAATTGTTCTATGGGGTTTTAGGAGGTCTGGGTCAATTCGGTATTATAAC 719
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 746 GTTAAACCCTGAATTGTTCTATGGAGTTTTAGGAGGTTTGGGTCAATTCGGTATTATAAC 805
Query 720 GAGGGCCAGGATTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GAGGGCCAGGATTGCGTTGGATCATGCACCCACAAGGGTGAAATGGTCTCGCATACTCTA 865
Query 780 CAGTGACTTCTCGTCTTTTAAAAGAGACCAAGAGCGTTTGATATCAATGACCAATGATCG 839
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 866 CAGTGACTTCTCGGCTTTTAAAAGAGACCAAGAGCGTTTAATATCAATGACCAATGATC- 924
Query 840 TGGTGGAGTTGACTTTTTGGAAGGTCAACTGATGATGTCAAACGGCTTCGTAGACACCTC 899
| | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 925 TCG-G-AGTTGACTTTTTGGAAGGTCAACTTATGATGTCAAATGGCTTCGTAGACACCTC 982
Query 900 TTTCTTCCCACTCTCCGATCAAACAAGAGTCGCATCTCTTGTGAATGACCACCGTATCAT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 983 TTTCTTCCCACTCTCCGATCAAACAAGAGTCGCATCTCTTGTGAATGACCACCGGATCAT 1042
Query 960 CTATGTTCTCGAAGTAGCCAAGTATTATGATAGAACCACCCTTCCCATCATTGACCAGGT 1019
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1043 CTATGTTCTCGAAGTAGCCAAGTATTATGACAGAACCACCCTTCCCATTATTGACCAGGT 1102
Query 1020 GATTGACATGTTAACTAGAACTCTAGGTTTCGCTCCGGGGTTTATGTTCGTACAAGATGT 1079
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1103 GATTGACACGTTAAGTAGAACTCTAGGTTTCGCTCCAGGGTTTATGTTCGTACAAGATGT 1162
Query 1080 TCCTTATTTCGATTTCTTGAATCGTGTCCGAAACGAAGAAGATAAACTCAGATCTTTAGG 1139
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TCCGTATTTCGATTTCTTGAACCGTGTCCGAAACGAAGAAGATAAACTCAGATCTTTAGG 1222
Query 1140 GCTATGGGAAGTTCCTCATCCATGGCTTAACATCTTCGTACCGGGATCTCGAATT-ATAG 1198
||||||||||||||||||||||||||||||||||| || ||||| |||||||| | ||
Sbjct 1223 ACTATGGGAAGTTCCTCATCCATGGCTTAACATCTTTGTCCCGGGGTCTCGAATCCA-AG 1281
Query 1199 ATTTTCATGATGGTGTTATCAATGGCCTTCTTCTAAACCAAACCTCTACTACTGGTGTTA 1258
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1282 ATTTTCATGATGGTGTTATTAATGGCCTTCTTCTAAACCAAACCTCAACTTCTGGTGTTA 1341
Query 1259 CTCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACCGG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTCTCTTCTATCCCACAAACCGAAACAAATGGAACAACCGCATGTCAACGATGACACCGG 1401
Query 1319 ACGAAGATGTTTTTTATGTGATCGGATTCCTGCAATCAGCTGGTGGATCTCAAAATTGGC 1378
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1402 ACGAAGATGTTTTTTATGTGATCGGATTACTGCAATCAGCTGGTGGATCTCAAAATTGGC 1461
Query 1379 AAGAACTTGAAAATCTCAACGACAAGGTTATTCAGTTTTGTGAAAACTCGGGAATTAAGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AAGAACTTGAAAATCTCAACGACAAGGTTATTCAGTTTTGTGAAAACTCGGGAATTAAGA 1521
Query 1439 TTAAAGAATATTTGATGCATTATACAAGAAAAGAAGATTGGGTTAAACATTTTGGACCAA 1498
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TTAAGGAATATTTGATGCACTATACAAGAAAAGAAGATTGGGTTAAACATTTTGGACCAA 1581
Query 1499 AATGGGATGATTTTTTGAGGAAGAAAATTATGTTTGATCCCAAAAGACTATTGTCTCCAG 1558
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 AATGGGATGATTTTTTAAGAAAGAAAATTATGTTTGATCCCAAAAGACTATTGTCTCCAG 1641
Query 1559 GACAAGACATATTTAATTAA 1578
||||||||||||||||||||
Sbjct 1642 GACAAGACATATTTAATTAA 1661
> AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048268
REVERSE LENGTH=1595
Length=1595
Score = 121 bits (65), Expect = 3e-26
Identities = 186/242 (77%), Gaps = 18/242 (7%)
Strand=Plus/Plus
Query 500 CGCCGGTTTCTTGGACGGATTATTTGTATCTTAGC-GTTGGCGGGACGTTGTCCAACG-C 557
||||||||||||||||||||||||||||| ||| | || || |||||||| || |||| |
Sbjct 505 CGCCGGTTTCTTGGACGGATTATTTGTAT-TTAACAGTCGGTGGGACGTTATCAAACGGC 563
Query 558 TGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAGTAGCGTTC-ATGAGCTTG 616
||||| |||| || |||||| | |||| || ||||| | || |||| | ||| | |
Sbjct 564 -GGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATCACTAATGTTCTA-GAGATGG 621
Query 617 ACGTCATTACTGGAAAAGGTGAAATGATG-A-CTTGCTCGCCAAAGTTA--AACCCTGAA 672
| || |||||||||||||| || || || | |||| || | || | | ||| | ||
Sbjct 622 ATGTTATTACTGGAAAAGGAGAGAT--TGCAACTTGTTC-C-AAGGACATGAACTCGGAT 677
Query 673 -TTGTTCTATGG-GGTTTTAGGAGGTCTGGGTCAATTCGGTATTATAACGAGGGCCAGGA 730
|| |||| | | ||| ||||||||| ||||||||||||| |||||||| || ||||| |
Sbjct 678 CTT-TTCT-TCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAA 735
Query 731 TT 732
||
Sbjct 736 TT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5