BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889167
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34290.1 | Symbols: AtRLP5, RLP5 | receptor like protein 5 |... 326 6e-88
AT4G29654.1 | Symbols: | Protein kinase superfamily protein | ... 246 4e-64
AT4G29490.1 | Symbols: | Metallopeptidase M24 family protein |... 104 3e-21
> AT1G34290.1 | Symbols: AtRLP5, RLP5 | receptor like protein 5
| chr1:12498000-12498800 FORWARD LENGTH=801
Length=801
Score = 326 bits (176), Expect = 6e-88
Identities = 395/499 (79%), Gaps = 21/499 (4%)
Strand=Plus/Plus
Query 127 CCAGAGGAGTTCGTAAAGAGTTGGCAAGGGAATGACCCTTGCCAATGGTTTGGGATAAAC 186
|||||||| || |||| ||||||||||||||| ||||||| |||||||||| | ||||
Sbjct 139 CCAGAGGAATTTGTAACGAGTTGGCAAGGGAACAACCCTTGTGAATGGTTTGGTACAAAC 198
Query 187 TGTCTGGAAGGTATCATCA-CGAGTATCACCTTTATCTCCCTGAACATGAGCGGAACCAT 245
||| |||| |||||||||| | ||||| | ||||| ||| ||||| | | |||||| ||
Sbjct 199 TGTTTGGAGGGTATCATCATTG-GTATCTCTTTTATTTCCTTGAACTTAATCGGAACTAT 257
Query 246 CTCTCCACGGTTTGCAGATCTAACCTCTCTTCAGGTGATAGATCTTTCGCATAACGGTCT 305
||||||| |||||||||||||||||||||| ||| |||||||||||||||||| | ||
Sbjct 258 TTCTCCACATTTTGCAGATCTAACCTCTCTTCGGGTCATAGATCTTTCGCATAACCGACT 317
Query 306 TACAGGTACCATTCCTCCCGAACTCACTAAGTT---GAACCTGAGAACTCTGGATCTTTC 362
|| | ||||||||||| ||| |||| ||||| |||||||| | | ||||| ||||
Sbjct 318 TAAATGTACCATTCCTTTTGAAATCACAAAGTTGAAGAACCTGACTATTGTGGATGTTTC 377
Query 363 CTATAACCGTCTTCAT-GGGACACTGCCGCAATTTAG-GAACATAGTTCCAAACATTG-A 419
||||||| |||||| |||| | | || | |||| | | || ||| | || || |
Sbjct 378 TTATAACCAACTTCATGGGGA-AGTCCCACGCGTTAGAGGA-ATTGTTATACTCACTGAA 435
Query 420 AGGAAACTCAGACATCGAGACAAACC-GCGTTCTTGTTCCTTCGCCAACAAGGAACAAGA 478
||||| | || |||||||| | |||| || ||||||||||||||||||||||||||||||
Sbjct 436 AGGAATC-CAAACATCGAGTC-AACCTGCCTTCTTGTTCCTTCGCCAACAAGGAACAAGA 493
Query 479 ACAAATTAGTTGTTTTGGCACTTCT-CATAGGCATTGTGGTCGGTTTGGTTGTTGCTGTA 537
||||| | |||||||| |||||| | | || ||| |||| |||||||| ||||| | |
Sbjct 494 ACAAACCAACTGTTTTGGTACTTCTACTTGGG-ATTTTGGTTGGTTTGGTGGTTGCAGGA 552
Query 538 GGAGGAGCTTTTGCAGTCTATCTGT-TGAAGAAAAGGAAGCAAT-TAAACAGGCTTCCA- 594
|||| | | |||| | |||| |||| | | || |||||||||| ||| ||||| |||
Sbjct 553 GGAGCATCCTTTGGATTCTACCTGTAT-AGGATAAGGAAGCAACCTAAG-AGGCT-CCAA 609
Query 595 GAACCCAATGAAACAGTGA 613
||||| |||||| ||||||
Sbjct 610 GAACCAAATGAAGCAGTGA 628
> AT4G29654.1 | Symbols: | Protein kinase superfamily protein
| chr4:14531601-14532454 REVERSE LENGTH=477
Length=477
Score = 246 bits (133), Expect = 4e-64
Identities = 298/369 (81%), Gaps = 45/369 (12%)
Strand=Plus/Plus
Query 1216 GCTCAAATCTTTGTAAATGCAGTGACTGGAAGGATAACTACAAAAGCTGATGTCTACAGT 1275
||| ||| |||||||| |||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 101 GCTTAAA-CTTTGTAAGTGCATTGATTGGAAGGGTAACTACAAAAGCTGATGTCTACAGT 159
Query 1276 TTTGGGGTTATTCTCATGGAGCTAGTCACAGGCAAGGAAGCTTTAGACGAGAAGCGATCA 1335
||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 160 TTTGGAGTTATTCTCATGGAGTTAGTCACAAGCAAGGAAGCTTTAGACAAGAAGCGATCA 219
Query 1336 GATGCTGAACAACACATTCCCA----C-G-AA-A-C-TTGCC-A--T--------T--CA 1373
||||||||||| ||||||| || | | || | | ||| | | | | ||
Sbjct 220 GATGCTGAACATCACATTCTCAAGAACCGCAACATCATTGACGACGTAGCGAGACTAGCA 279
Query 1374 -TT----GCTGCGCCAAGGAACTCACACAGAGACCAGAGATGAGGTATGTTGTTTCGACA 1428
|| ||||||||||||| ||||| |||||||||||||||| ||||||||| || |||
Sbjct 280 ATTCACTGCTGCGCCAAGGAGCTCACTCAGAGACCAGAGATGAAGTATGTTGTCTCTACA 339
Query 1429 CTTACCTCACTCACTGGCACTGGGCAGTGGAAGCCCAGTGAAATAGAAGAAGACAACGAC 1488
|||||||||||| || |||| |||||||| |||||||| | ||| |||||||
Sbjct 340 CTTACCTCACTCTGTGACACT------TGGAAGCCTAGTGAAATCGTAGA---CAACGAC 390
Query 1489 AGGGACGACA----T--ATTAGAA-TATCTAAAGAGATGGAAGGAGCAAGAGATGGAGGG 1541
||||| |||| | ||||||| | | |||||||||||||||||||||||||||||||
Sbjct 391 AGGGAGGACACAAGTGTATTAGAACT-TGTAAAGAGATGGAAGGAGCAAGAGATGGAGGG 449
Query 1542 AACCAGCAG 1550
|| ||||||
Sbjct 450 AAGCAGCAG 458
> AT4G29490.1 | Symbols: | Metallopeptidase M24 family protein
| chr4:14487894-14491525 FORWARD LENGTH=1714
Length=1714
Score = 104 bits (56), Expect = 3e-21
Identities = 67/72 (93%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 1561 GCTGTTCTGGATGCACATAATTCTGTAA-CTTCTGCAATGAAGTCAGGAGTAAAGTGGGT 1619
|||||||||||||||||||||||||||| || |||| |||||| |||||||||| |||||
Sbjct 965 GCTGTTCTGGATGCACATAATTCTGTAATCT-CTGCGATGAAGCCAGGAGTAAACTGGGT 1023
Query 1620 GGATATGCACAA 1631
||||||||||||
Sbjct 1024 GGATATGCACAA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5