BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889195
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein ... 327 2e-89
AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein ... 250 3e-66
> AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein
| chr4:14464987-14465983 REVERSE LENGTH=495
Length=495
Score = 327 bits (177), Expect = 2e-89
Identities = 185/189 (98%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAAGGTACACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATGGGTAAGGTACACGGTTCCTTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA 141
Query 61 GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAAAGGTTGCAACAC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 142 GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCTCACAAAAGGTTGCAACAC 201
Query 121 AATCGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCGTCT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 AATCGCCGTTTCGTAACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCTTCT 261
Query 181 GAGAAGTAG 189
|||||||||
Sbjct 262 GAGAAGTAG 270
> AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein
| chr2:8514954-8516138 FORWARD LENGTH=604
Length=604
Score = 250 bits (135), Expect = 3e-66
Identities = 172/190 (91%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAAGGTACACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 84 ATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCTAAA 143
Query 61 GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAAAGGT-TGCAACA 119
||||| |||||||| |||||||||||||| ||||| ||||| || || | | |||||||
Sbjct 144 GTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCG-TCTGCAACA 202
Query 120 CAATCGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCGTC 179
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 203 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCATC 262
Query 180 TGAGAAGTAG 189
|||||||||
Sbjct 263 AGAGAAGTAG 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8350024266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5